miRNEST 2.0, an integrative microRNA resource :: BLAST
>40367_rco-MIR319a:mirbase
Length = 211
Score = 117 bits (59), Expect = 3e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 120 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 179
|||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 133 cagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggact 192
Query: 180 gaagggagctc 190
|||||||||||
Sbjct: 193 gaagggagctc 203
Score = 97.6 bits (49), Expect = 3e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcattca 60
||||||||||||||||| |||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 7 gagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactcattca 66
Query: 61 tccaaatgctgag 73
||||||| |||||
Sbjct: 67 tccaaatactgag 79
>41404_ptc-MIR319a:mirbase
Length = 188
Score = 109 bits (55), Expect = 8e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 120 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 179
|||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 107 cagtaaatgagtgaatgatgcgggagacaaattgaatcctaagcttcctgtacttggact 166
Query: 180 gaagggagctc 190
|||||||||||
Sbjct: 167 gaagggagctc 177
Score = 97.6 bits (49), Expect = 3e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcattca 60
||||||||||||||||| ||||||||| ||||||||| |||||||| ||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactcattca 72
Query: 61 tccaaatgctgag 73
||||||| |||||
Sbjct: 73 tccaaatactgag 85
>41282_ctr-MIR319:mirbase
Length = 186
Score = 109 bits (55), Expect = 8e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 120 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 179
|||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||
Sbjct: 104 cagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtgcttggact 163
Query: 180 gaagggagctc 190
|||||||||||
Sbjct: 164 gaagggagctc 174
Score = 69.9 bits (35), Expect = 7e-13
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcattca 60
||||||||||| ||||| |||||||||| ||||||| |||||||| | ||||||||||
Sbjct: 10 gagctttcttcggtccacttatgggtggcaataggatttaattagctgctgactcattca 69
Query: 61 tccaaat 67
|||||||
Sbjct: 70 tccaaat 76
>40464_gma-MIR319a:mirbase
Length = 207
Score = 103 bits (52), Expect = 5e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 127 tgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggactgaaggga 186
||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct: 123 tgagtgaatgatgcgggagacaaattgaatcttaagtttcctgtacttggactgaaggga 182
Query: 187 gctc 190
||||
Sbjct: 183 gctc 186
Score = 97.6 bits (49), Expect = 3e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcattca 60
||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||
Sbjct: 23 gagctttcttcagtccactcatgggtgacagtaagattcaattagctgccgactcattca 82
Query: 61 tccaaatgctgag 73
|||||||| ||||
Sbjct: 83 tccaaatgttgag 95
>41636_vvi-MIR319c:mirbase
Length = 182
Score = 101 bits (51), Expect = 2e-22
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcattca 60
||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactcattca 72
Query: 61 tccaaat 67
|||||||
Sbjct: 73 tccaaat 79
Score = 101 bits (51), Expect = 2e-22
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 120 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 179
|||||| ||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 98 cagtaaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggact 157
Query: 180 gaagggagctc 190
|||||||||||
Sbjct: 158 gaagggagctc 168
>40465_gma-MIR319b:mirbase
Length = 208
Score = 97.6 bits (49), Expect = 3e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 118 ctcagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttgga 177
||||| || ||||||||||||||||||||||| ||| ||||||| ||||||||||||||
Sbjct: 115 ctcagcaaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttgga 174
Query: 178 ctgaagggagctc 190
|||||||||||||
Sbjct: 175 ctgaagggagctc 187
Score = 75.8 bits (38), Expect = 1e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccaaacatgggtggcagtaggatt-caattagcttccgactcattc 59
||||||||||||||||| ||||||| || || |||| ||||||||| |||||||||||
Sbjct: 23 gagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactcattc 82
Query: 60 atccaaatgctgag 73
||||||||||||||
Sbjct: 83 atccaaatgctgag 96
>40704_mtr-MIR319b:mirbase
Length = 180
Score = 95.6 bits (48), Expect = 1e-20
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 127 tgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggactgaaggga 186
||||||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||||
Sbjct: 110 tgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaaggga 169
Query: 187 gctc 190
||||
Sbjct: 170 gctc 173
Score = 60.0 bits (30), Expect = 6e-10
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccaaacatgggtggcagtaggatt-caattagcttccgactcattc 59
|||||||||| |||||| |||||||| || || |||| ||||||||| | |||||||||
Sbjct: 6 gagctttctttagtccactcatgggtgacaataagatttcaattagctgctgactcattc 65
Query: 60 atccaaatgctgag 73
||||||||| ||||
Sbjct: 66 atccaaatgttgag 79
>41544_sly-MIR319:mirbase
Length = 168
Score = 91.7 bits (46), Expect = 2e-19
Identities = 68/74 (91%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 118 ctcagtaactgagtgaatgatgcgggag-acaagttggatcttaagcttcctgtacttgg 176
||||| |||||||||||||| ||||||| |||||||| |||| ||||||||||||||||
Sbjct: 94 ctcagcaactgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttgg 153
Query: 177 actgaagggagctc 190
||||||||||||||
Sbjct: 154 actgaagggagctc 167
Score = 52.0 bits (26), Expect = 2e-07
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 32 taggattcaattagcttccgactcattcatccaaatgctgag 73
|||| ||||||| ||| |||||||||||||||||||| ||||
Sbjct: 31 tagggttcaatttgctgccgactcattcatccaaatgttgag 72
>41185_aqc-MIR319:mirbase
Length = 177
Score = 73.8 bits (37), Expect = 4e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 122 gtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggactga 181
|||| ||| |||||||| ||||||| | |||||||||| ||||| ||||||||||||||
Sbjct: 104 gtaaatgaatgaatgatccgggagattaattggatcttatgcttcttgtacttggactga 163
Query: 182 agggagctc 190
|||||||||
Sbjct: 164 agggagctc 172
Score = 48.1 bits (24), Expect = 2e-06
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcattca 60
||||| ||||||||||| ||| ||| | ||| ||||||||| ||| ||||||||||||
Sbjct: 4 gagctctcttcagtccactcataggtagtagtcagattcaatttgctgccgactcattca 63
Query: 61 tcca 64
||||
Sbjct: 64 tcca 67
>40069_ath-MIR319a:mirbase
Length = 176
Score = 65.9 bits (33), Expect = 1e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 35 gattcaattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||||||
Sbjct: 40 gattcaattagcttccgactcattcatccaaat 72
>41405_ptc-MIR319b:mirbase
Length = 185
Score = 61.9 bits (31), Expect = 2e-10
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 120 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 179
|||||| ||| ||| ||||||||||||||| || ||||||| |||||| | |||||||
Sbjct: 104 cagtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggact 163
Query: 180 gaagggagctc 190
|||||||||||
Sbjct: 164 gaagggagctc 174
Score = 46.1 bits (23), Expect = 1e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 35 gattcaattagcttccgactcattcatccaaatgctgag 73
|||| |||||| | ||||||||||||||||||| |||||
Sbjct: 47 gatttaattagttaccgactcattcatccaaatactgag 85
>39858_aly-MIR319a:mirbase
Length = 221
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||
Sbjct: 67 caattagcttccgactcattcatccaaat 95
>41638_vvi-MIR319f:mirbase
Length = 193
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 167 ctgtacttggactgaagggagctc 190
|||| |||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctc 179
>41410_ptc-MIR319g:mirbase
Length = 204
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 167 ctgtacttggactgaagggagctc 190
|||| |||||||||||||||||||
Sbjct: 170 ctgtgcttggactgaagggagctc 193
>41409_ptc-MIR319f:mirbase
Length = 202
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 167 ctgtacttggactgaagggagctc 190
|||| |||||||||||||||||||
Sbjct: 168 ctgtgcttggactgaagggagctc 191
>41407_ptc-MIR319d:mirbase
Length = 193
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 167 ctgtacttggactgaagggagctc 190
|||| |||||||||||||||||||
Sbjct: 159 ctgtgcttggactgaagggagctc 182
>41406_ptc-MIR319c:mirbase
Length = 196
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 167 ctgtacttggactgaagggagctc 190
|||| |||||||||||||||||||
Sbjct: 162 ctgtgcttggactgaagggagctc 185
>40369_rco-MIR319c:mirbase
Length = 188
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 167 ctgtacttggactgaagggagctc 190
|||| |||||||||||||||||||
Sbjct: 157 ctgtgcttggactgaagggagctc 180
