miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42480_ssp-MIR444c:mirbase
Length = 108
Score = 208 bits (105), Expect = 6e-55
Identities = 107/108 (99%)
Strand = Plus / Plus
Query: 1 ggtgacaagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgacaagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccatac 60
Query: 61 cgataattttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
|||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 61 cgataattttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 108
>42086_osa-MIR444c:mirbase
Length = 138
Score = 135 bits (68), Expect = 7e-33
Identities = 94/103 (91%)
Strand = Plus / Plus
Query: 6 caagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgata 65
|||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 22 caagctagagacagcaactgcatatcttgcaagaaaatcggttttatggccataccgatg 81
Query: 66 attttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 82 attttcttgcaagctgtgcagttgttgtctcaagcttgctgcc 124
Score = 40.1 bits (20), Expect = 3e-04
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 66 attttcttgcangttgtgcagttgttgtctcaagcttgc 104
||||||||||| | | |||||||| |||||| |||||||
Sbjct: 59 attttcttgcaagatatgcagttgctgtctctagcttgc 21
>42085_osa-MIR444c:mirbase
Length = 138
Score = 135 bits (68), Expect = 7e-33
Identities = 94/103 (91%)
Strand = Plus / Plus
Query: 6 caagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgata 65
|||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 22 caagctagagacagcaactgcatatcttgcaagaaaatcggttttatggccataccgatg 81
Query: 66 attttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 82 attttcttgcaagctgtgcagttgttgtctcaagcttgctgcc 124
Score = 40.1 bits (20), Expect = 3e-04
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 66 attttcttgcangttgtgcagttgttgtctcaagcttgc 104
||||||||||| | | |||||||| |||||| |||||||
Sbjct: 59 attttcttgcaagatatgcagttgctgtctctagcttgc 21
>42084_osa-MIR444b:mirbase
Length = 138
Score = 111 bits (56), Expect = 1e-25
Identities = 99/114 (86%), Gaps = 6/114 (5%)
Strand = Plus / Plus
Query: 1 ggtgacaagctagaggcagcaactgcatatcttgcaagaaaatt------ggttttcgaa 54
||||||||||| | ||||||||||||| ||||||||||||||| | ||||| |
Sbjct: 13 ggtgacaagcttgtggcagcaactgcacatcttgcaagaaaatctttagggtttttcaga 72
Query: 55 ccataccgataattttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 73 ccataccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 126
>42083_osa-MIR444b:mirbase
Length = 138
Score = 111 bits (56), Expect = 1e-25
Identities = 99/114 (86%), Gaps = 6/114 (5%)
Strand = Plus / Plus
Query: 1 ggtgacaagctagaggcagcaactgcatatcttgcaagaaaatt------ggttttcgaa 54
||||||||||| | ||||||||||||| ||||||||||||||| | ||||| |
Sbjct: 13 ggtgacaagcttgtggcagcaactgcacatcttgcaagaaaatctttagggtttttcaga 72
Query: 55 ccataccgataattttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 73 ccataccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 126
>42091_osa-MIR444f:mirbase
Length = 154
Score = 67.9 bits (34), Expect = 1e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 68 tttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 110 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 150
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 6 caagctagaggcagcaactgcatatcttgcaagaaa 41
|||||| |||||| |||||||| | |||||||||||
Sbjct: 145 caagcttgaggcaacaactgcacaacttgcaagaaa 110
>41894_hvu-MIR444b:mirbase
Length = 121
Score = 63.9 bits (32), Expect = 2e-11
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 68 tttcttgcangttgtgcagttgttgtctcaagcttgctg 106
||||||||| |||||||||||| ||||||||||||||||
Sbjct: 78 tttcttgcaagttgtgcagttgctgtctcaagcttgctg 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 6 caagctagaggcagcaactgcatatcttgcaagaaa 41
|||||| ||| ||||||||||| | |||||||||||
Sbjct: 113 caagcttgagacagcaactgcacaacttgcaagaaa 78
>42478_ssp-MIR444a:mirbase
Length = 105
Score = 60.0 bits (30), Expect = 3e-10
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 67 ttttcttgcangttgtgcagttgttgtctcaagcttg 103
|||||||||| ||||||||||||||| ||||||||||
Sbjct: 69 ttttcttgcaagttgtgcagttgttgcctcaagcttg 105
Score = 42.1 bits (21), Expect = 8e-05
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 6 caagctagaggcagcaactgcatatcttgcaagaaaa 42
|||||| |||||| |||||||| | ||||||||||||
Sbjct: 105 caagcttgaggcaacaactgcacaacttgcaagaaaa 69
>42089_osa-MIR444d:mirbase
Length = 143
Score = 60.0 bits (30), Expect = 3e-10
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 68 tttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
||||||||| |||||||||||| || |||||||||||||||
Sbjct: 89 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcc 129
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 6 caagctagaggcagcaactgcatatcttgcaagaaa 41
|||||| ||||||||||||||| | |||||||||||
Sbjct: 124 caagcttgaggcagcaactgcacaacttgcaagaaa 89
>42088_osa-MIR444d:mirbase
Length = 143
Score = 60.0 bits (30), Expect = 3e-10
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 68 tttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
||||||||| |||||||||||| || |||||||||||||||
Sbjct: 89 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcc 129
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 6 caagctagaggcagcaactgcatatcttgcaagaaa 41
|||||| ||||||||||||||| | |||||||||||
Sbjct: 124 caagcttgaggcagcaactgcacaacttgcaagaaa 89
>42087_osa-MIR444d:mirbase
Length = 143
Score = 60.0 bits (30), Expect = 3e-10
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 68 tttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
||||||||| |||||||||||| || |||||||||||||||
Sbjct: 89 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcc 129
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 6 caagctagaggcagcaactgcatatcttgcaagaaa 41
|||||| ||||||||||||||| | |||||||||||
Sbjct: 124 caagcttgaggcagcaactgcacaacttgcaagaaa 89
>42082_osa-MIR444a:mirbase
Length = 131
Score = 60.0 bits (30), Expect = 3e-10
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 56 cataccgataattttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
||||||||| || |||||||| ||| |||||||| || |||||||||||||||
Sbjct: 68 cataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcc 120
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 6 caagctagaggcagcaactgcatatcttgcaagaa 40
|||||| ||||||||||||||||| ||||||||||
Sbjct: 115 caagcttgaggcagcaactgcataacttgcaagaa 81
>42081_osa-MIR444a:mirbase
Length = 131
Score = 60.0 bits (30), Expect = 3e-10
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 56 cataccgataattttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
||||||||| || |||||||| ||| |||||||| || |||||||||||||||
Sbjct: 68 cataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcc 120
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 6 caagctagaggcagcaactgcatatcttgcaagaa 40
|||||| ||||||||||||||||| ||||||||||
Sbjct: 115 caagcttgaggcagcaactgcataacttgcaagaa 81
>42479_ssp-MIR444b:mirbase
Length = 106
Score = 58.0 bits (29), Expect = 1e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 68 tttcttgcangttgtgcagttgttgtctcaagcttg 103
||||||||| ||||||||||||||| ||||||||||
Sbjct: 71 tttcttgcaagttgtgcagttgttgcctcaagcttg 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 6 caagctagaggcagcaactgcatatcttgcaagaaa 41
|||||| |||||| |||||||| | |||||||||||
Sbjct: 106 caagcttgaggcaacaactgcacaacttgcaagaaa 71
>42649_tae-MIR444b:mirbase
Length = 162
Score = 52.0 bits (26), Expect = 8e-08
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 68 tttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
||||||||| || ||||||||| || |||||||||||||||
Sbjct: 110 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcc 150
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 6 caagctagaggcagcaactgcatatcttgcaagaaa 41
|||||| ||||||||||||||| |||||||||||
Sbjct: 145 caagcttgaggcagcaactgcacgacttgcaagaaa 110
>41893_hvu-MIR444a:mirbase
Length = 114
Score = 52.0 bits (26), Expect = 8e-08
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 68 tttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
||||||||| || ||||||||| || |||||||||||||||
Sbjct: 73 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcc 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 6 caagctagaggcagcaactgcatatcttgcaagaaa 41
|||||| ||||||||||||||| |||||||||||
Sbjct: 108 caagcttgaggcagcaactgcacgacttgcaagaaa 73
>42648_tae-MIR444:mirbase
Length = 426
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 6 caagctagaggcagcaactgcatatcttgcaagaaa 41
|||||| |||||||||||||||| |||||||||||
Sbjct: 169 caagcttgaggcagcaactgcatgacttgcaagaaa 134
Score = 44.1 bits (22), Expect = 2e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 68 tttcttgcangttgtgcagttgttgtctcaagcttgctgcc 108
||||||||| || |||||||| || |||||||||||||||
Sbjct: 134 tttcttgcaagtcatgcagttgctgcctcaagcttgctgcc 174
>42090_osa-MIR444e:mirbase
Length = 140
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 7 aagctagaggcagcaactgcatatcttgcaagaaa 41
|||||||||||| |||||||||| ||||| |||||
Sbjct: 22 aagctagaggcaccaactgcataacttgcgagaaa 56
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 7 aagctagaggcagcaactgcatatcttgc 35
||||| ||||||||||||||||| |||||
Sbjct: 119 aagcttgaggcagcaactgcataacttgc 91
>41805_bdi-MIR444:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 6 caagctagaggcagcaactgcata 29
|||||| |||||||||||||||||
Sbjct: 106 caagcttgaggcagcaactgcata 83
