miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42479_ssp-MIR444b:mirbase
Length = 106
Score = 119 bits (60), Expect = 2e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 acttgcaagaaagtcacaaaatcaattgcaggatcatacttgtggctttcttgcaagttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 acttgcaagaaagtcacaaaatcaattgcaggatcatacttgtggctttcttgcaagttg 84
>42478_ssp-MIR444a:mirbase
Length = 105
Score = 95.6 bits (48), Expect = 3e-21
Identities = 58/60 (96%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 1 acttgcaagaaagtcacaaaatcaattgcaggatcatacttgtggctttcttgcaagttg 60
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 25 acttgcaagaaagtcacaaaatcaattgcagga-catacttgtggttttcttgcaagttg 83
>42089_osa-MIR444d:mirbase
Length = 143
Score = 50.1 bits (25), Expect = 2e-07
Identities = 53/60 (88%), Gaps = 3/60 (5%)
Strand = Plus / Plus
Query: 1 acttgcaagaaagtcacaaaatcaattgcaggatcatacttgtggctttcttgcaagttg 60
||||||||||||| |||||||||| | | | ||| ||||||||||||||||||||||||
Sbjct: 46 acttgcaagaaaggcacaaaatcattag-atgat--tacttgtggctttcttgcaagttg 102
>42088_osa-MIR444d:mirbase
Length = 143
Score = 50.1 bits (25), Expect = 2e-07
Identities = 53/60 (88%), Gaps = 3/60 (5%)
Strand = Plus / Plus
Query: 1 acttgcaagaaagtcacaaaatcaattgcaggatcatacttgtggctttcttgcaagttg 60
||||||||||||| |||||||||| | | | ||| ||||||||||||||||||||||||
Sbjct: 46 acttgcaagaaaggcacaaaatcattag-atgat--tacttgtggctttcttgcaagttg 102
>42087_osa-MIR444d:mirbase
Length = 143
Score = 50.1 bits (25), Expect = 2e-07
Identities = 53/60 (88%), Gaps = 3/60 (5%)
Strand = Plus / Plus
Query: 1 acttgcaagaaagtcacaaaatcaattgcaggatcatacttgtggctttcttgcaagttg 60
||||||||||||| |||||||||| | | | ||| ||||||||||||||||||||||||
Sbjct: 46 acttgcaagaaaggcacaaaatcattag-atgat--tacttgtggctttcttgcaagttg 102
>42649_tae-MIR444b:mirbase
Length = 162
Score = 48.1 bits (24), Expect = 6e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 35 catacttgtggctttcttgcaagt 58
||||||||||||||||||||||||
Sbjct: 98 catacttgtggctttcttgcaagt 121
>42648_tae-MIR444:mirbase
Length = 426
Score = 48.1 bits (24), Expect = 6e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 35 catacttgtggctttcttgcaagt 58
||||||||||||||||||||||||
Sbjct: 122 catacttgtggctttcttgcaagt 145
>41893_hvu-MIR444a:mirbase
Length = 114
Score = 48.1 bits (24), Expect = 6e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 35 catacttgtggctttcttgcaagt 58
||||||||||||||||||||||||
Sbjct: 61 catacttgtggctttcttgcaagt 84
