miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42089_osa-MIR444d:mirbase
Length = 143
Score = 281 bits (142), Expect = 7e-77
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 1 gttattgcacatggtggcaccaagcatgaggcaacaactgcattacttgcaagaaaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gttattgcacatggtggcaccaagcatgaggcaacaactgcattacttgcaagaaaggca 61
Query: 61 caaaatcattagatgattacttgtggctttcttgcaagttgtgcagttgctgcctcaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 caaaatcattagatgattacttgtggctttcttgcaagttgtgcagttgctgcctcaagc 121
Query: 121 ttgctgcctccctctgccaaat 142
||||||||||||||||||||||
Sbjct: 122 ttgctgcctccctctgccaaat 143
Score = 65.9 bits (33), Expect = 8e-12
Identities = 96/115 (83%), Gaps = 4/115 (3%)
Strand = Plus / Minus
Query: 16 ggcaccaagcatgaggcaacaactgcattacttgcaagaaaggcacaa--aatcattaga 73
|||| ||||| ||||||| |||||||| ||||||||||||| ||||| |||||| |
Sbjct: 129 ggcagcaagcttgaggcagcaactgcacaacttgcaagaaagccacaagtaatcatctaa 70
Query: 74 tgattacttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgcc 128
||||| ||||| ||||||||||||| |||||||| ||||||| ||||| ||||
Sbjct: 69 tgatt--ttgtgcctttcttgcaagtaatgcagttgttgcctcatgcttggtgcc 17
>42088_osa-MIR444d:mirbase
Length = 143
Score = 281 bits (142), Expect = 7e-77
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 1 gttattgcacatggtggcaccaagcatgaggcaacaactgcattacttgcaagaaaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gttattgcacatggtggcaccaagcatgaggcaacaactgcattacttgcaagaaaggca 61
Query: 61 caaaatcattagatgattacttgtggctttcttgcaagttgtgcagttgctgcctcaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 caaaatcattagatgattacttgtggctttcttgcaagttgtgcagttgctgcctcaagc 121
Query: 121 ttgctgcctccctctgccaaat 142
||||||||||||||||||||||
Sbjct: 122 ttgctgcctccctctgccaaat 143
Score = 65.9 bits (33), Expect = 8e-12
Identities = 96/115 (83%), Gaps = 4/115 (3%)
Strand = Plus / Minus
Query: 16 ggcaccaagcatgaggcaacaactgcattacttgcaagaaaggcacaa--aatcattaga 73
|||| ||||| ||||||| |||||||| ||||||||||||| ||||| |||||| |
Sbjct: 129 ggcagcaagcttgaggcagcaactgcacaacttgcaagaaagccacaagtaatcatctaa 70
Query: 74 tgattacttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgcc 128
||||| ||||| ||||||||||||| |||||||| ||||||| ||||| ||||
Sbjct: 69 tgatt--ttgtgcctttcttgcaagtaatgcagttgttgcctcatgcttggtgcc 17
>42087_osa-MIR444d:mirbase
Length = 143
Score = 281 bits (142), Expect = 7e-77
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 1 gttattgcacatggtggcaccaagcatgaggcaacaactgcattacttgcaagaaaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gttattgcacatggtggcaccaagcatgaggcaacaactgcattacttgcaagaaaggca 61
Query: 61 caaaatcattagatgattacttgtggctttcttgcaagttgtgcagttgctgcctcaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 caaaatcattagatgattacttgtggctttcttgcaagttgtgcagttgctgcctcaagc 121
Query: 121 ttgctgcctccctctgccaaat 142
||||||||||||||||||||||
Sbjct: 122 ttgctgcctccctctgccaaat 143
Score = 65.9 bits (33), Expect = 8e-12
Identities = 96/115 (83%), Gaps = 4/115 (3%)
Strand = Plus / Minus
Query: 16 ggcaccaagcatgaggcaacaactgcattacttgcaagaaaggcacaa--aatcattaga 73
|||| ||||| ||||||| |||||||| ||||||||||||| ||||| |||||| |
Sbjct: 129 ggcagcaagcttgaggcagcaactgcacaacttgcaagaaagccacaagtaatcatctaa 70
Query: 74 tgattacttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgcc 128
||||| ||||| ||||||||||||| |||||||| ||||||| ||||| ||||
Sbjct: 69 tgatt--ttgtgcctttcttgcaagtaatgcagttgttgcctcatgcttggtgcc 17
>42479_ssp-MIR444b:mirbase
Length = 106
Score = 117 bits (59), Expect = 2e-27
Identities = 96/106 (90%), Gaps = 3/106 (2%)
Strand = Plus / Plus
Query: 21 caagcatgaggcaacaactgcattacttgcaagaaaggcacaaaatcattag-atgat-- 77
||||||||||||| |||||||||||||||||||||| |||||||||| | | | |||
Sbjct: 1 caagcatgaggcaggaactgcattacttgcaagaaagtcacaaaatcaattgcaggatca 60
Query: 78 tacttgtggctttcttgcaagttgtgcagttgctgcctcaagcttg 123
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 61 tacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttg 106
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 21 caagcatgaggcaacaactgcattacttgcaagaaaggcacaa 63
||||| |||||||||||||||| ||||||||||||| |||||
Sbjct: 106 caagcttgaggcaacaactgcacaacttgcaagaaagccacaa 64
Score = 46.1 bits (23), Expect = 7e-06
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 81 ttgtggctttcttgcaagttgtgcagttgctgcctcaagcttg 123
||||| ||||||||||||| ||||||| |||||||| |||||
Sbjct: 43 ttgtgactttcttgcaagtaatgcagttcctgcctcatgcttg 1
>42648_tae-MIR444:mirbase
Length = 426
Score = 105 bits (53), Expect = 9e-24
Identities = 95/109 (87%), Gaps = 5/109 (4%)
Strand = Plus / Plus
Query: 38 ctgcattacttgcaagaaaggcacaaaatcattagatgat-----tacttgtggctttct 92
||||||||||||||| ||||| |||||| | |||| ||| |||||||||||||||
Sbjct: 79 ctgcattacttgcaaacaaggcgcaaaattaatagaagatcaccatacttgtggctttct 138
Query: 93 tgcaagttgtgcagttgctgcctcaagcttgctgcctccctctgccaaa 141
||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 139 tgcaagtcatgcagttgctgcctcaagcttgctgcctccctttgccaaa 187
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 16 ggcaccaagcatgaggcaacaactgcattacttgc 50
|||||| ||||||||||||||||||||||||||||
Sbjct: 22 ggcaccgagcatgaggcaacaactgcattacttgc 56
Score = 56.0 bits (28), Expect = 7e-09
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 16 ggcaccaagcatgaggcaacaactgcattacttgcaagaaaggcacaa 63
|||| ||||| ||||||| ||||||||| ||||||||||||| |||||
Sbjct: 174 ggcagcaagcttgaggcagcaactgcatgacttgcaagaaagccacaa 127
>42478_ssp-MIR444a:mirbase
Length = 105
Score = 105 bits (53), Expect = 9e-24
Identities = 94/105 (89%), Gaps = 2/105 (1%)
Strand = Plus / Plus
Query: 21 caagcatgaggcaacaactgcattacttgcaagaaaggcacaaaatcattag-atgat-t 78
||||||||||||| |||||||||||||||||||||| |||||||||| | | | || |
Sbjct: 1 caagcatgaggcaggaactgcattacttgcaagaaagtcacaaaatcaattgcaggacat 60
Query: 79 acttgtggctttcttgcaagttgtgcagttgctgcctcaagcttg 123
|||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 61 acttgtggttttcttgcaagttgtgcagttgttgcctcaagcttg 105
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 21 caagcatgaggcaacaactgcattacttgcaagaaa 56
||||| |||||||||||||||| ||||||||||||
Sbjct: 105 caagcttgaggcaacaactgcacaacttgcaagaaa 70
Score = 46.1 bits (23), Expect = 7e-06
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 81 ttgtggctttcttgcaagttgtgcagttgctgcctcaagcttg 123
||||| ||||||||||||| ||||||| |||||||| |||||
Sbjct: 43 ttgtgactttcttgcaagtaatgcagttcctgcctcatgcttg 1
>42649_tae-MIR444b:mirbase
Length = 162
Score = 99.6 bits (50), Expect = 5e-22
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 78 tacttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgcctcc 131
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 100 tacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 153
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 16 ggcaccaagcatgaggcaacaactgcattacttgc 50
|||||| ||||||||||||||||||||||||||||
Sbjct: 15 ggcaccgagcatgaggcaacaactgcattacttgc 49
Score = 48.1 bits (24), Expect = 2e-06
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 16 ggcaccaagcatgaggcaacaactgcattacttgcaagaaaggcacaa 63
|||| ||||| ||||||| |||||||| ||||||||||||| |||||
Sbjct: 150 ggcagcaagcttgaggcagcaactgcacgacttgcaagaaagccacaa 103
>41894_hvu-MIR444b:mirbase
Length = 121
Score = 99.6 bits (50), Expect = 5e-22
Identities = 104/121 (85%), Gaps = 2/121 (1%)
Strand = Plus / Plus
Query: 13 ggtggcaccaagcatgaggcaacaactgcattacttgcaagaaaggcacaaaatcattag 72
|||||||||||||||||||||||||||||||||||| |||| ||| |||||||| | |
Sbjct: 1 ggtggcaccaagcatgaggcaacaactgcattactttcaaggaagttacaaaatctatgg 60
Query: 73 atgat--tacttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgcctc 130
| | || | ||| |||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 61 gtcttcataatcgtgactttcttgcaagttgtgcagttgctgtctcaagcttgctgactc 120
Query: 131 c 131
|
Sbjct: 121 c 121
>41893_hvu-MIR444a:mirbase
Length = 114
Score = 95.6 bits (48), Expect = 8e-21
Identities = 51/52 (98%)
Strand = Plus / Plus
Query: 78 tacttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgcct 129
|||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 63 tacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcct 114
Score = 48.1 bits (24), Expect = 2e-06
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 16 ggcaccaagcatgaggcaacaactgcattacttgcaagaaaggcacaa 63
|||| ||||| ||||||| |||||||| ||||||||||||| |||||
Sbjct: 113 ggcagcaagcttgaggcagcaactgcacgacttgcaagaaagccacaa 66
>42091_osa-MIR444f:mirbase
Length = 154
Score = 81.8 bits (41), Expect = 1e-16
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 87 ctttcttgcaagttgtgcagttgctgcctcaagcttgctgcctcc 131
||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 109 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 153
Score = 69.9 bits (35), Expect = 5e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 11 atggtggcaccaagcatgaggcaacaactgcattacttgcaag 53
||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 atggtggcaccaagcatgaggttacaactgcattacttgcaag 43
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 16 ggcaccaagcatgaggcaacaactgcattacttgcaagaaag 57
|||| ||||| |||||||||||||||| |||||||||||||
Sbjct: 150 ggcagcaagcttgaggcaacaactgcacaacttgcaagaaag 109
>42084_osa-MIR444b:mirbase
Length = 138
Score = 81.8 bits (41), Expect = 1e-16
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 88 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcctccctctgccaa 140
|||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 86 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgccaa 138
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 88 tttcttgcaagttgtgcagttgctgcctcaagcttg 123
||||||||||| ||||||||||||||| ||||||||
Sbjct: 53 tttcttgcaagatgtgcagttgctgccacaagcttg 18
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 16 ggcaccaagcatgaggcaacaactgcattacttgcaagaaa 56
|||| ||||| |||| ||||||||||| ||||||||||||
Sbjct: 126 ggcagcaagcttgagacaacaactgcacaacttgcaagaaa 86
>42083_osa-MIR444b:mirbase
Length = 138
Score = 81.8 bits (41), Expect = 1e-16
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 88 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcctccctctgccaa 140
|||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 86 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgccaa 138
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 88 tttcttgcaagttgtgcagttgctgcctcaagcttg 123
||||||||||| ||||||||||||||| ||||||||
Sbjct: 53 tttcttgcaagatgtgcagttgctgccacaagcttg 18
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 16 ggcaccaagcatgaggcaacaactgcattacttgcaagaaa 56
|||| ||||| |||| ||||||||||| ||||||||||||
Sbjct: 126 ggcagcaagcttgagacaacaactgcacaacttgcaagaaa 86
>42082_osa-MIR444a:mirbase
Length = 131
Score = 77.8 bits (39), Expect = 2e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 89 ttcttgcaagttgtgcagttgctgcctcaagcttgctgcctcc 131
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 81 ttcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 123
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 16 ggcaccaagcatgaggcaacaactgcattacttgcaagaa 55
|||| ||||| ||||||| ||||||||| |||||||||||
Sbjct: 120 ggcagcaagcttgaggcagcaactgcataacttgcaagaa 81
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 88 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcc 128
|||||||||| || ||||||||| |||| |||||||||||
Sbjct: 52 tttcttgcaaattatgcagttgccacctctagcttgctgcc 12
>42081_osa-MIR444a:mirbase
Length = 131
Score = 77.8 bits (39), Expect = 2e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 89 ttcttgcaagttgtgcagttgctgcctcaagcttgctgcctcc 131
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 81 ttcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 123
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 16 ggcaccaagcatgaggcaacaactgcattacttgcaagaa 55
|||| ||||| ||||||| ||||||||| |||||||||||
Sbjct: 120 ggcagcaagcttgaggcagcaactgcataacttgcaagaa 81
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 88 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcc 128
|||||||||| || ||||||||| |||| |||||||||||
Sbjct: 52 tttcttgcaaattatgcagttgccacctctagcttgctgcc 12
>42086_osa-MIR444c:mirbase
Length = 138
Score = 71.9 bits (36), Expect = 1e-13
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 88 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcctccctctgcca 139
||||||||||| |||||||||| || |||||||||||||||||||| |||||
Sbjct: 84 tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccctttgcca 135
Score = 48.1 bits (24), Expect = 2e-06
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 88 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcctcc 131
||||||||||| | ||||||||||| ||| ||||||| ||||||
Sbjct: 57 tttcttgcaagatatgcagttgctgtctctagcttgccgcctcc 14
>42085_osa-MIR444c:mirbase
Length = 138
Score = 71.9 bits (36), Expect = 1e-13
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 88 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcctccctctgcca 139
||||||||||| |||||||||| || |||||||||||||||||||| |||||
Sbjct: 84 tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccctttgcca 135
Score = 48.1 bits (24), Expect = 2e-06
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 88 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcctcc 131
||||||||||| | ||||||||||| ||| ||||||| ||||||
Sbjct: 57 tttcttgcaagatatgcagttgctgtctctagcttgccgcctcc 14
>42480_ssp-MIR444c:mirbase
Length = 108
Score = 65.9 bits (33), Expect = 8e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 88 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcc 128
|||||||||||||||||||||| || |||||||||||||||
Sbjct: 68 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 108
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 88 tttcttgcaagttgtgcagttgctgcctcaagcttg 123
||||||||||| | ||||||||||||||| ||||||
Sbjct: 41 tttcttgcaagatatgcagttgctgcctctagcttg 6
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 16 ggcaccaagcatgaggcaacaactgcattacttgcaagaaa 56
|||| ||||| |||| ||||||||||| ||||||||||||
Sbjct: 108 ggcagcaagcttgagacaacaactgcacaacttgcaagaaa 68
>42090_osa-MIR444e:mirbase
Length = 140
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 94 gcaagttgtgcagttgctgcctcaagcttgctgcct 129
||||||| ||||||||||||||||||||| ||||||
Sbjct: 91 gcaagttatgcagttgctgcctcaagcttactgcct 126
>41805_bdi-MIR444:mirbase
Length = 110
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 96 aagttgtgcagttgctgcctcaagcttgctgc 127
||||| ||||||||||||||||||||||||||
Sbjct: 79 aagttatgcagttgctgcctcaagcttgctgc 110
