miRNEST 2.0, an integrative microRNA resource :: BLAST
>41541_sly-MIR171d:mirbase
Length = 112
Score = 123 bits (62), Expect = 2e-29
Identities = 81/86 (94%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccgaagacgagtttacgttttgttttcgtaaagaacgat 60
||||||||||||||||||||||||||||||| |||| | || |||||||||||||||||
Sbjct: 10 gcgatgttggtgaggttcaatccgaagacgaatttatgctta-ttttcgtaaagaacgat 68
Query: 61 ctcagattgagccgcgccaatatcac 86
||||||||||||||||||||||||||
Sbjct: 69 ctcagattgagccgcgccaatatcac 94
>40365_rco-MIR171g:mirbase
Length = 89
Score = 91.7 bits (46), Expect = 8e-20
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccgaagacgagtttacgttttgttttcgtaaagaacgat 60
|||||||||||||||||||||||||||||| ||||| || | || |||||| |||||
Sbjct: 2 gcgatgttggtgaggttcaatccgaagacggatttacacattctgtt-gtaaaggacgat 60
Query: 61 ctcagattgagccgcgccaatatcac 86
||||||||||||||||||||||||||
Sbjct: 61 ctcagattgagccgcgccaatatcac 86
>41626_vvi-MIR171e:mirbase
Length = 103
Score = 79.8 bits (40), Expect = 3e-16
Identities = 75/86 (87%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccgaagacgagtttacgttttgttttcgtaaagaacgat 60
|||||||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct: 10 gcgatgttggtgaggttcaatccgaagacggatttacgaagagc---cgtaaagaacgat 66
Query: 61 ctcagattgagccgcgccaatatcac 86
||| ||||||||||||||||||||||
Sbjct: 67 ctctgattgagccgcgccaatatcac 92
>41118_tcc-MIR171c:mirbase
Length = 123
Score = 77.8 bits (39), Expect = 1e-15
Identities = 77/89 (86%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaac 57
|||||||||||||||||||||||||||||| |||||| | || ||||||| ||
Sbjct: 17 gcgatgttggtgaggttcaatccgaagacggatttacgcatgcattcagtcgtaaaatac 76
Query: 58 gatctcagattgagccgcgccaatatcac 86
|||||||||||||||||||||||||||||
Sbjct: 77 gatctcagattgagccgcgccaatatcac 105
>40699_mtr-MIR171e:mirbase
Length = 93
Score = 73.8 bits (37), Expect = 2e-14
Identities = 77/88 (87%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccgaagacgagtttac--gttttgttttcgtaaagaacg 58
|||||||||||||||||||||||||||||| ||||| || | | || ||||| |||
Sbjct: 4 gcgatgttggtgaggttcaatccgaagacggatttacatgtatagagtt-gtaaaatacg 62
Query: 59 atctcagattgagccgcgccaatatcac 86
||||||||||||||||||||||||||||
Sbjct: 63 atctcagattgagccgcgccaatatcac 90
>41383_ptc-MIR171c:mirbase
Length = 104
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 56 acgatctcagattgagccgcgccaatatcac 86
|||||||||||||||||||||||||||||||
Sbjct: 67 acgatctcagattgagccgcgccaatatcac 97
>41384_ptc-MIR171d:mirbase
Length = 100
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 57 cgatctcagattgagccgcgccaatatcac 86
||||||||||||||||||||||||||||||
Sbjct: 64 cgatctcagattgagccgcgccaatatcac 93
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccgaagac 29
|||||||||||||||||||||||||||||
Sbjct: 9 gcgatgttggtgaggttcaatccgaagac 37
>41627_vvi-MIR171f:mirbase
Length = 103
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 58 gatctcagattgagccgcgccaatatcac 86
|||||||||||||||||||||||||||||
Sbjct: 64 gatctcagattgagccgcgccaatatcac 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccgaaga 28
|||||||||||||||||||||| |||||
Sbjct: 10 gcgatgttggtgaggttcaatctgaaga 37
>39479_ppt-MIR171b:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 61 ctcagattgagccgcgccaatatcac 86
||||||||||||||||||||||||||
Sbjct: 61 ctcagattgagccgcgccaatatcac 86
>41117_tcc-MIR171b:mirbase
Length = 120
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 tcagattgagccgcgccaatatcac 86
|||||||||||||||||||||||||
Sbjct: 78 tcagattgagccgcgccaatatcac 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccgaaga 28
|||||||||||||||||||||| |||||
Sbjct: 19 gcgatgttggtgaggttcaatctgaaga 46
>39478_ppt-MIR171a:mirbase
Length = 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 tcagattgagccgcgccaatatcac 86
|||||||||||||||||||||||||
Sbjct: 61 tcagattgagccgcgccaatatcac 85
>39739_smo-MIR171d:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 60 tctcagattgagccgcgccaatatcac 86
||||| |||||||||||||||||||||
Sbjct: 65 tctcaaattgagccgcgccaatatcac 91
>42555_sbi-MIR171j:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatcac 86
||||||||||||||||||||||
Sbjct: 84 gattgagccgcgccaatatcac 105
>41540_sly-MIR171c:mirbase
Length = 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatcac 86
||||||||||||||||||||||
Sbjct: 79 gattgagccgcgccaatatcac 100
>41231_csi-MIR171a:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatcac 86
||||||||||||||||||||||
Sbjct: 68 gattgagccgcgccaatatcac 89
>41211_ccl-MIR171:mirbase
Length = 321
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatcac 86
||||||||||||||||||||||
Sbjct: 123 gattgagccgcgccaatatcac 144
>41981_osa-MIR171a:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccga 25
||||| |||||||||||||||||||
Sbjct: 8 gcgatattggtgaggttcaatccga 32
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 68 gattgagccgcgccaatatc 87
>42774_zma-MIR171n:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 58 gattgagccgcgccaatatc 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 7 ttggtgaggttcaatccga 25
|||||||||||||||||||
Sbjct: 4 ttggtgaggttcaatccga 22
>42761_zma-MIR171a:mirbase
Length = 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 80 gattgagccgcgccaatatc 99
>42552_sbi-MIR171g:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 58 gattgagccgcgccaatatc 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 7 ttggtgaggttcaatccga 25
|||||||||||||||||||
Sbjct: 3 ttggtgaggttcaatccga 21
>41764_bdi-MIR171a:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 51 gattgagccgcgccaatatc 70
>41391_ptc-MIR171k:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
>41116_tcc-MIR171a:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 80 gattgagccgcgccaatatc 99
>40322_bra-MIR171e:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 85 gattgagccgcgccaatatc 104
>40291_bna-MIR171g:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
>40290_bna-MIR171f:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 85 gattgagccgcgccaatatc 104
>40060_ath-MIR171a:mirbase
Length = 123
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 89 gattgagccgcgccaatatc 108
>39849_aly-MIR171a:mirbase
Length = 198
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 131 gattgagccgcgccaatatc 150
>42770_zma-MIR171j:mirbase
Length = 129
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 60 tctcagattgagccgcgccaatatcac 86
|||| |||||||||| |||||||||||
Sbjct: 86 tctctgattgagccgtgccaatatcac 112
>42547_sbi-MIR171b:mirbase
Length = 132
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 60 tctcagattgagccgcgccaatatcac 86
|||| |||||||||| |||||||||||
Sbjct: 89 tctctgattgagccgtgccaatatcac 115
>39736_smo-MIR171a:mirbase
Length = 135
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 64 agattgagccgcgccaatatcac 86
||||||||||| |||||||||||
Sbjct: 102 agattgagccgtgccaatatcac 124
