miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42477_ssp-MIR437c:mirbase
Length = 177
Score = 323 bits (163), Expect = 3e-89
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 15 atatctttgatcaaatttatggaaaaatgtatcaacatctacaatatcaattttattttc 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 atatctttgatcaaatttatggaaaaatgtatcaacatctacaatatcaattttattttc 74
Query: 75 ataaaattctccatgaaatatttcttaatagtgcatttattcgaacttgtagatgttaat 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 ataaaattctccatgaaatatttcttaatagtgcatttattcgaacttgtagatgttaat 134
Query: 135 atatttttctaaaactttggtcaaagttagagaagtctgactt 177
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 atatttttctaaaactttggtcaaagttagagaagtctgactt 177
>42475_ssp-MIR437a:mirbase
Length = 175
Score = 111 bits (56), Expect = 2e-25
Identities = 137/160 (85%), Gaps = 3/160 (1%)
Strand = Plus / Plus
Query: 19 ctttgatcaaatttatggaaaaatgtatcaacatctacaatatcaattttattttcataa 78
|||||||||| ||||| |||||||| | ||| ||||| |||||||| | | || ||| |
Sbjct: 18 ctttgatcaagtttatagaaaaatgcaccaaaatctagaatatcaaact-agttccatta 76
Query: 79 aattctccatgaaatatttcttaatagtgcatttattcgaacttgtagatgttaatatat 138
||||||||||||||||| | || ||| |||||||||| ||||||||||||| ||||||||
Sbjct: 77 aattctccatgaaatatattttgataatgcatttatt-gaacttgtagatgataatatat 135
Query: 139 ttt-tctaaaactttggtcaaagttagagaagtctgactt 177
||| ||||||| ||| |||||||||||||||| ||||||
Sbjct: 136 tttttctaaaaacttgatcaaagttagagaagtttgactt 175
>42610_sbi-MIR437k:mirbase
Length = 172
Score = 109 bits (55), Expect = 7e-25
Identities = 88/99 (88%)
Strand = Plus / Plus
Query: 79 aattctccatgaaatatttcttaatagtgcatttattcgaacttgtagatgttaatatat 138
|||||||||| |||||| ||||| ||||||||||||| ||| ||||||| ||| | ||||
Sbjct: 72 aattctccataaaatatgtcttattagtgcatttatttgaatttgtagaagttgacatat 131
Query: 139 ttttctaaaactttggtcaaagttagagaagtctgactt 177
|||||||||| |||||||||||||||||||| ||||||
Sbjct: 132 ttttctaaaaacttggtcaaagttagagaagtttgactt 170
Score = 56.0 bits (28), Expect = 9e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 136 tatttttctaaaactttggtcaaagttagagaagtctgac 175
|||||||||| || ||||||||||||||||||||| ||||
Sbjct: 42 tatttttctataagtttggtcaaagttagagaagtttgac 3
>42607_sbi-MIR437g:mirbase
Length = 176
Score = 99.6 bits (50), Expect = 7e-22
Identities = 133/158 (84%), Gaps = 2/158 (1%)
Strand = Plus / Minus
Query: 19 ctttgatcaaatttatggaaaaatgtatcaacatctacaatatcaattttattttcataa 78
|||||| ||| ||||| ||||| || |||||||||||||| ||||| | | ||||| |
Sbjct: 157 ctttgaccaagtttatagaaaattgcatcaacatctacaacatcaaact-agtttcacca 99
Query: 79 aattctccatgaaatatttcttaatagtgcatttattcgaacttgtagatgttaatatat 138
||||||| ||||||||| |||| |||||||||||||| ||||||||| | || || ||||
Sbjct: 98 aattctctatgaaatatgtcttgatagtgcatttatttgaacttgtacacgtgaacatat 39
Query: 139 ttttctaaaactttggtcaaagttagagaagtctgact 176
|| |||||||| || |||||||||||| |||| |||||
Sbjct: 38 ttctctaaaac-ttagtcaaagttagaaaagtttgact 2
Score = 50.1 bits (25), Expect = 6e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 121 ttgtagatgttaatatatttttctaaaactttggtcaaagttagagaagtctgactt 177
||||||||||| || | ||||||| || |||||||||||||||||||| ||||||
Sbjct: 118 ttgtagatgttgatgcaattttctataaacttggtcaaagttagagaagtttgactt 174
>42614_sbi-MIR437o:mirbase
Length = 175
Score = 87.7 bits (44), Expect = 3e-18
Identities = 93/108 (86%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 71 tttcataaaattctccatgaaatatttcttaatagtgcatttattcgaacttgtagatgt 130
|||||| |||||||| ||||||||| |||| |||||||||||| |||| ||||| |||
Sbjct: 66 tttcattaaattctctatgaaatatgtcttggtagtgcatttatgtgaacctgtagctgt 125
Query: 131 taatata-tttttctaaaactttggtcaaagttagagaagtctgactt 177
||||||| ||||| ||||| || ||||||||||||||||| ||||||
Sbjct: 126 taatatattttttataaaaacttagtcaaagttagagaagtttgactt 173
>42606_sbi-MIR437f:mirbase
Length = 174
Score = 87.7 bits (44), Expect = 3e-18
Identities = 81/92 (88%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 86 catgaaatatttcttaatagtgcatttattcgaacttgtagatgttaatatatttttcta 145
|||||||||| |||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct: 92 catgaaatatgtcttgatagtgcatttatttggtattgtagatgttaatatatttttcta 33
Query: 146 -aaactttggtcaaagttagagaagtctgact 176
| ||||| |||||||||||||||| |||||
Sbjct: 32 cagacttttttcaaagttagagaagtttgact 1
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 151 ttggtcaaagttagagaagtctgactt 177
|||||||||||||||||||| ||||||
Sbjct: 146 ttggtcaaagttagagaagtttgactt 172
>42609_sbi-MIR437j:mirbase
Length = 172
Score = 85.7 bits (43), Expect = 1e-17
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 71 tttcataaaattctccatgaaatatttcttaatagtgcatttattcgaacttgtagatgt 130
|||||| | |||||||| ||||||| |||| |||| |||||||| | ||||||||||||
Sbjct: 66 tttcattagattctccaagaaatatgtcttgatagcacatttatttgtacttgtagatgt 125
Query: 131 taatatatttttctaaaactttggtcaaagttagagaagtctgactt 177
|||| ||||||| |||| ||||||||||||||||||| ||||||
Sbjct: 126 taatgtattttttgaaaaacatggtcaaagttagagaagtttgactt 172
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 151 ttggtcaaagttagagaagtctgac 175
|||||||||||||||||||| ||||
Sbjct: 25 ttggtcaaagttagagaagtttgac 1
>42611_sbi-MIR437l:mirbase
Length = 170
Score = 77.8 bits (39), Expect = 3e-15
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 123 gtagatgttaatatatttttctaaaactttggtcaaagttagagaagtctgactt 177
|||||||||||||||||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 116 gtagatgttaatatatttttctaaaaacttggccaaagttagagaagtttgactt 170
>42622_sbi-MIR437w:mirbase
Length = 173
Score = 71.9 bits (36), Expect = 2e-13
Identities = 125/152 (82%), Gaps = 7/152 (4%)
Strand = Plus / Plus
Query: 30 tttatggaaaaatgtatcaacatctacaatatcaattttattttcataaaattctccatg 89
||||| |||||||| |||||||| | ||| ||||| || | | |||| ||||||||| ||
Sbjct: 25 tttatagaaaaatgcatcaacatttccaacatcaaatt-agtatcattaaattctccgtg 83
Query: 90 aaatatttcttaatagtgcatttattcgaacttgtagatgttaata----tatttttcta 145
|||||| | | |||||||||||| | |||||||||||| |||||| | ||||||||
Sbjct: 84 aaatatat--tcatagtgcatttacttgaacttgtagattttaatagttttttttttcta 141
Query: 146 aaactttggtcaaagttagagaagtctgactt 177
||| ||||| |||||||||||||| ||||||
Sbjct: 142 aaaacttggtgaaagttagagaagtttgactt 173
>42631_sbi-MIR1435a:mirbase
Length = 287
Score = 65.9 bits (33), Expect = 1e-11
Identities = 108/132 (81%), Gaps = 7/132 (5%)
Strand = Plus / Minus
Query: 16 tatctttgatcaaatttatggaaaaatgtatcaacatctacaatatcaattttattttca 75
||||||||| ||| |||| |||| ||| |||||||||||||| ||||| ||| ||| ||
Sbjct: 230 tatctttgaccaagtttacagaaagatgcatcaacatctacaacatcaagtttgttt-ca 172
Query: 76 taaaattctccatgaaatatttct------taatagtgcatttattcgaacttgtagatg 129
| |||| ||||||||||||| | | | || |||||||||| |||||||||||||
Sbjct: 171 ttaaatcctccatgaaatatgtttggtagttggtattgcatttatttgaacttgtagatg 112
Query: 130 ttaatatatttt 141
||||||||||||
Sbjct: 111 ttaatatatttt 100
>42476_ssp-MIR437b:mirbase
Length = 172
Score = 60.0 bits (30), Expect = 6e-10
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 102 atagtgcatttattcgaacttgtagatgttaatatatttttctaaaactttggtcaaagt 161
|||||||||||||| || ||| |||| ||||||||||||| || || |||||||||||
Sbjct: 97 atagtgcatttatttgatattgcagatattaatatatttttgtataaacttggtcaaagt 156
Query: 162 tagagaagtctgac 175
|||| |||| ||||
Sbjct: 157 tagacaagtttgac 170
>42605_sbi-MIR437e:mirbase
Length = 101
Score = 58.0 bits (29), Expect = 2e-09
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 133 atatatttttctaaaactttggtcaaagttagagaagtctgactt 177
|||||||||||| ||| |||||||||||||||||||| ||||||
Sbjct: 57 atatatttttctgaaaacttggtcaaagttagagaagtttgactt 101
>42613_sbi-MIR437n:mirbase
Length = 182
Score = 56.0 bits (28), Expect = 9e-09
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 126 gatgttaatatatttttctaaaactttggtcaaagttagagaagtctgactt 177
||||||| |||||||||||| || ||||| |||||||||||||| ||||||
Sbjct: 129 gatgttagtatatttttctacaaacttggttaaagttagagaagtttgactt 180
>42621_sbi-MIR437v:mirbase
Length = 114
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 30 tttatggaaaaatgtatcaacatctacaatatcaa 64
||||| |||||||| ||||||||||||||||||||
Sbjct: 86 tttatagaaaaatgcatcaacatctacaatatcaa 52
Score = 50.1 bits (25), Expect = 6e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 121 ttgtagatgttaatatatttttctaaaactttggtcaaagttagagaagtctgactt 177
||||||||||| || ||||||||| || |||| ||||||||||||||| ||||||
Sbjct: 58 ttgtagatgttgatgcatttttctataaacttggacaaagttagagaagtttgactt 114
>42612_sbi-MIR437m:mirbase
Length = 174
Score = 54.0 bits (27), Expect = 4e-08
Identities = 54/62 (87%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 118 aacttgtagatgttaatatatttttctaaaactttggtc--aaagttagagaagtctgac 175
|||| ||| ||||||||||| |||||||||| |||||| |||||||||||||| ||||
Sbjct: 111 aactagtatatgttaatataattttctaaaaacttggtcaaaaagttagagaagtttgac 170
Query: 176 tt 177
||
Sbjct: 171 tt 172
>42619_sbi-MIR437t:mirbase
Length = 170
Score = 50.1 bits (25), Expect = 6e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 137 atttttctaaaactttggtcaaagttagagaagtctgactt 177
||||||||| || |||||||||||||||||||| ||||||
Sbjct: 130 atttttctataaacttggtcaaagttagagaagtttgactt 170
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 121 ttgtagatgttaatatatttttc 143
|||||||||||||||||||||||
Sbjct: 51 ttgtagatgttaatatatttttc 29
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 36 gaaaaatgtatcaacatctacaatatcaa 64
||||||| ||| |||||||||||||||||
Sbjct: 29 gaaaaatatattaacatctacaatatcaa 57
>42618_sbi-MIR437s:mirbase
Length = 176
Score = 50.1 bits (25), Expect = 6e-07
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 109 atttattcgaacttgtagatgttaatatatttttctaaaactttggtcaaagttagagaa 168
||||||| ||||||||| |||| | |||||||| |||||| ||||||||||||||||
Sbjct: 107 atttatttgaacttgtaaatgtcagtatatttt-ctaaaagcacggtcaaagttagagaa 165
Query: 169 gtctgactt 177
|| ||||||
Sbjct: 166 gtttgactt 174
>42602_sbi-MIR437b:mirbase
Length = 171
Score = 50.1 bits (25), Expect = 6e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 137 atttttctaaaactttggtcaaagttagagaagtctgactt 177
||||||||| || |||||||||||||||||||| ||||||
Sbjct: 131 atttttctataaacttggtcaaagttagagaagtttgactt 171
Score = 44.1 bits (22), Expect = 4e-05
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 121 ttgtagatgttaatatatttttctaaaactttggtcaaagttagagaagt 170
||||| ||| |||||||||||| || ||| ||| ||||| ||||||||||
Sbjct: 54 ttgtatatgctaatatatttttgtataacattgatcaaaattagagaagt 5
>42063_osa-MIR437:mirbase
Length = 213
Score = 50.1 bits (25), Expect = 6e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 137 atttttctaaaactttggtcaaagttagagaagtctgactt 177
||||||||| || |||||||||||||||||||| ||||||
Sbjct: 135 atttttctataaacttggtcaaagttagagaagtttgactt 175
>42620_sbi-MIR437u:mirbase
Length = 164
Score = 48.1 bits (24), Expect = 2e-06
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 97 tcttaatagtgcatttattcgaacttgtagatgttaatatatttttctaaaa 148
|||| |||||||| ||||| | |||| ||||||||||||||||||| ||||
Sbjct: 77 tcttgatagtgcacttatttcagcttgcagatgttaatatatttttccaaaa 26
Score = 44.1 bits (22), Expect = 4e-05
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 136 tatttttctaaaactttggtcaaagttagagaagtctgactt 177
|||||||||| || ||||| |||||||||||||| ||||||
Sbjct: 123 tatttttctataaacttggtgaaagttagagaagtttgactt 164
>42615_sbi-MIR437p:mirbase
Length = 188
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 151 ttggtcaaagttagagaagtctgactt 177
|||||||||||||||||||| ||||||
Sbjct: 160 ttggtcaaagttagagaagtttgactt 186
>42608_sbi-MIR437i:mirbase
Length = 170
Score = 46.1 bits (23), Expect = 9e-06
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 125 agatgttaatatatttttctaaaactttggtcaaagttagagaagtctgac 175
||||||||||||| |||||| || ||||||||||||| |||||| ||||
Sbjct: 51 agatgttaatataactttctagaaacttggtcaaagttaaagaagtttgac 1
Score = 44.1 bits (22), Expect = 4e-05
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Plus
Query: 137 atttttcta-aaactttggtcaaagttagagaagtctgactt 177
||||||||| |||||||| |||||||||||||||| ||||||
Sbjct: 130 atttttctataaactttg-tcaaagttagagaagtttgactt 170
>42601_sbi-MIR437a:mirbase
Length = 190
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 154 gtcaaagttagagaagtctgactt 177
||||||||||||||||| ||||||
Sbjct: 165 gtcaaagttagagaagtttgactt 188
