miRNEST 2.0, an integrative microRNA resource :: BLAST
>40465_gma-MIR319b:mirbase
Length = 208
Score = 321 bits (162), Expect = 9e-89
Identities = 165/166 (99%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactcattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 gagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactcattc 82
Query: 61 atccaaatgctgagtgaaagcgaagaaagatactcagcaaatgagtgaatgatgcgggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 atccaaatgctgagtgaaagcgaagaaagatactcagcaaatgagtgaatgatgcgggag 142
Query: 121 acaaattgattcttaagtgtcctgtacttggactgaagggagctcc 166
|||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 143 acaaattgattcttaagtttcctgtacttggactgaagggagctcc 188
>40464_gma-MIR319a:mirbase
Length = 207
Score = 242 bits (122), Expect = 7e-65
Identities = 156/166 (93%), Gaps = 1/166 (0%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactcattc 60
||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||
Sbjct: 23 gagctttcttcagtccactcatgggtgacagtaagatt-caattagctgccgactcattc 81
Query: 61 atccaaatgctgagtgaaagcgaagaaagatactcagcaaatgagtgaatgatgcgggag 120
||||||||| |||||| ||||||| ||| |||||||||| ||||||||||||||||||||
Sbjct: 82 atccaaatgttgagtgtaagcgaataaatatactcagcagatgagtgaatgatgcgggag 141
Query: 121 acaaattgattcttaagtgtcctgtacttggactgaagggagctcc 166
||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 142 acaaattgaatcttaagtttcctgtacttggactgaagggagctcc 187
>40704_mtr-MIR319b:mirbase
Length = 180
Score = 194 bits (98), Expect = 1e-50
Identities = 153/169 (90%), Gaps = 3/169 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactcattc 60
|||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 6 gagctttctttagtccactcatgggtgacaataagatttcaattagctgctgactcattc 65
Query: 61 atccaaatgctgagtgaaagcga-agaaagata--ctcagcaaatgagtgaatgatgcgg 117
||||||||| ||||| ||| | ||||| ||| |||| ||||||||||||||||||||
Sbjct: 66 atccaaatgttgagtaaaatatatagaaacatatactcatcaaatgagtgaatgatgcgg 125
Query: 118 gagacaaattgattcttaagtgtcctgtacttggactgaagggagctcc 166
|||||||||||| |||||||| |||| ||||||||||||||||||||||
Sbjct: 126 gagacaaattgaatcttaagtttcctatacttggactgaagggagctcc 174
>41282_ctr-MIR319:mirbase
Length = 186
Score = 161 bits (81), Expect = 2e-40
Identities = 149/168 (88%), Gaps = 4/168 (2%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactcattc 60
||||||||||| ||||||||||||||| ||||| ||||| |||||||||| |||||||||
Sbjct: 10 gagctttcttcggtccacttatgggtggcaataggattt-aattagctgctgactcattc 68
Query: 61 atccaaatgctgagtgaaagcgaagaaa--gatactcagcaaatgagtgaatgatgcggg 118
|||||||| || ||| |||| | |||| ||||| ||| ||||||||||||||||||||
Sbjct: 69 atccaaatacttagt-aaagggtcgaaatggatacccagtaaatgagtgaatgatgcggg 127
Query: 119 agacaaattgattcttaagtgtcctgtacttggactgaagggagctcc 166
||||||||||| ||||||| |||||| ||||||||||||||||||||
Sbjct: 128 agacaaattgaatcttaagcttcctgtgcttggactgaagggagctcc 175
>41404_ptc-MIR319a:mirbase
Length = 188
Score = 149 bits (75), Expect = 8e-37
Identities = 146/167 (87%), Gaps = 2/167 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactcattc 60
||||||||||||||||||| ||||||| | || ||||| ||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggtagtaggattt-aattagctgccgactcattc 71
Query: 61 atccaaatgctgagtgaaagcgaagaaagat-actcagcaaatgagtgaatgatgcggga 119
|||||||| |||||| |||| | |||| || ||| |||||||||||||||||||||
Sbjct: 72 atccaaatactgagttaaaggacaaggagattacccagtaaatgagtgaatgatgcggga 131
Query: 120 gacaaattgattcttaagtgtcctgtacttggactgaagggagctcc 166
|||||||||| || |||| |||||||||||||||||||||||||||
Sbjct: 132 gacaaattgaatcctaagcttcctgtacttggactgaagggagctcc 178
>40367_rco-MIR319a:mirbase
Length = 211
Score = 111 bits (56), Expect = 2e-25
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 99 aaatgagtgaatgatgcgggagacaaattgattcttaagtgtcctgtacttggactgaag 158
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 137 aaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaag 196
Query: 159 ggagctcc 166
||||||||
Sbjct: 197 ggagctcc 204
Score = 85.7 bits (43), Expect = 1e-17
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactcattc 60
||||||||||||||||||| ||||||| | || ||||| ||||||||||||||||||||
Sbjct: 7 gagctttcttcagtccactcatgggtggcggtaggattt-aattagctgccgactcattc 65
Query: 61 atccaaatgctgagt 75
|||||||| ||||||
Sbjct: 66 atccaaatactgagt 80
>41636_vvi-MIR319c:mirbase
Length = 182
Score = 97.6 bits (49), Expect = 3e-21
Identities = 137/166 (82%), Gaps = 9/166 (5%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactcattc 60
||||||||||||||||||| ||||||| || || |||| ||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcagtaggattg-aattagctgccgactcattc 71
Query: 61 atccaaatgctgagtgaaagcgaagaaagatactcagcaaatgagtgaatgatgcgggag 120
|||||||| ||| || || | ||| ||| |||||| |||||||||||||||
Sbjct: 72 atccaaatactgtgttaagg--------actacccagtaaatgattgaatgatgcgggag 123
Query: 121 acaaattgattcttaagtgtcctgtacttggactgaagggagctcc 166
|||||||| ||||||| ||||| ||||||||||||||||||||
Sbjct: 124 acaaattggatcttaagctccctgtgcttggactgaagggagctcc 169
>41544_sly-MIR319:mirbase
Length = 168
Score = 77.8 bits (39), Expect = 2e-15
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 93 ctcagcaaatgagtgaatgatgcgggag-acaaattgattcttaagtgtcctgtacttgg 151
|||||||| ||||||||||| ||||||| |||| |||| |||| || ||||||||||||
Sbjct: 94 ctcagcaactgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttgg 153
Query: 152 actgaagggagctcc 166
|||||||||||||||
Sbjct: 154 actgaagggagctcc 168
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 38 ttcaattagctgccgactcattcatccaaatgctgag 74
||||||| |||||||||||||||||||||||| ||||
Sbjct: 36 ttcaatttgctgccgactcattcatccaaatgttgag 72
>41405_ptc-MIR319b:mirbase
Length = 185
Score = 58.0 bits (29), Expect = 2e-09
Identities = 104/127 (81%), Gaps = 4/127 (3%)
Strand = Plus / Plus
Query: 41 aattagctgccgactcattcatccaaatgctgagtgaa-agcgaagaaagatactcagca 99
|||||| | ||||||||||||||||||| |||||| | ||| |||| ||| ||| |
Sbjct: 52 aattagttaccgactcattcatccaaatactgagttatgagctaagat---tacccagta 108
Query: 100 aatgagtgaatgatgcgggagacaaattgattcttaagtgtcctgtacttggactgaagg 159
||||| ||| |||||||||||||||||| | |||||| |||| | ||||||||||||
Sbjct: 109 aatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggactgaagg 168
Query: 160 gagctcc 166
|||||||
Sbjct: 169 gagctcc 175
>41185_aqc-MIR319:mirbase
Length = 177
Score = 56.0 bits (28), Expect = 9e-09
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 99 aaatgagtgaatgatgcgggagacaaattgattcttaagtgtcctgtacttggactgaag 158
|||||| |||||||| ||||||| ||||| ||||| | || ||||||||||||||||
Sbjct: 106 aaatgaatgaatgatccgggagattaattggatcttatgcttcttgtacttggactgaag 165
Query: 159 ggagctcc 166
||||||||
Sbjct: 166 ggagctcc 173
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 38 ttcaattagctgccgactcattcatcca 65
||||||| ||||||||||||||||||||
Sbjct: 40 ttcaatttgctgccgactcattcatcca 67
>40070_ath-MIR319b:mirbase
Length = 172
Score = 56.0 bits (28), Expect = 9e-09
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 99 aaatgagtgaatgatgcgggagacaaattgattcttaagtgtcctgtacttggactgaag 158
|||||| ||||||||||| |||||||||||| |||| | | || | ||||||||||||
Sbjct: 103 aaatgaatgaatgatgcgagagacaaattgagtcttcacttctctatgcttggactgaag 162
Query: 159 ggagctcc 166
||||||||
Sbjct: 163 ggagctcc 170
>39859_aly-MIR319b:mirbase
Length = 246
Score = 56.0 bits (28), Expect = 9e-09
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 99 aaatgagtgaatgatgcgggagacaaattgattcttaagtgtcctgtacttggactgaag 158
|||||| ||||||||||| |||||||||||| |||| | | || | ||||||||||||
Sbjct: 142 aaatgaatgaatgatgcgagagacaaattgagtcttcacttctctatgcttggactgaag 201
Query: 159 ggagctcc 166
||||||||
Sbjct: 202 ggagctcc 209
>40069_ath-MIR319a:mirbase
Length = 176
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 38 ttcaattagctgccgactcattcatccaaat 68
||||||||||| |||||||||||||||||||
Sbjct: 42 ttcaattagcttccgactcattcatccaaat 72
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 99 aaatgagtgaatgatgcgggagacaaattg 128
|||||| |||||||||||| ||||||||||
Sbjct: 105 aaatgaatgaatgatgcggtagacaaattg 134
>39858_aly-MIR319a:mirbase
Length = 221
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 40 caattagctgccgactcattcatccaaat 68
||||||||| |||||||||||||||||||
Sbjct: 67 caattagcttccgactcattcatccaaat 95
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 99 aaatgagtgaatgatgcgggagacaaattg 128
|||||| |||||||||||| ||||||||||
Sbjct: 128 aaatgaatgaatgatgcggtagacaaattg 157
>42781_zma-MIR319b:mirbase
Length = 213
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 41 aattagctgccgactcattcatccaaatgc 70
||||||||||||||||||||| ||| ||||
Sbjct: 63 aattagctgccgactcattcacccacatgc 92
>42563_sbi-MIR319:mirbase
Length = 249
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 41 aattagctgccgactcattcatccaaatgc 70
||||||||||||||||||||| ||| ||||
Sbjct: 75 aattagctgccgactcattcacccacatgc 104
>41995_osa-MIR319b:mirbase
Length = 197
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 41 aattagctgccgactcattcatccaaatgc 70
||||||||||||||||||||| ||| ||||
Sbjct: 53 aattagctgccgactcattcacccacatgc 82
>41638_vvi-MIR319f:mirbase
Length = 193
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattcatccaaa 67
||||||||||||||||||||| ||||
Sbjct: 54 attagctgccgactcattcattcaaa 79
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 142 ctgtacttggactgaagggagctcc 166
|||| ||||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctcc 180
>41409_ptc-MIR319f:mirbase
Length = 202
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 41 aattagctgccgactcattcat 62
||||||||||||||||||||||
Sbjct: 55 aattagctgccgactcattcat 76
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 142 ctgtacttggactgaagggagctcc 166
|||| ||||||||||||||||||||
Sbjct: 168 ctgtgcttggactgaagggagctcc 192
>41407_ptc-MIR319d:mirbase
Length = 193
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattcatccaaa 67
||||||||||||||||||||| ||||
Sbjct: 54 attagctgccgactcattcattcaaa 79
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 142 ctgtacttggactgaagggagctcc 166
|||| ||||||||||||||||||||
Sbjct: 159 ctgtgcttggactgaagggagctcc 183
>41406_ptc-MIR319c:mirbase
Length = 196
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattcatccaaa 67
||||||||||||||||||||| ||||
Sbjct: 54 attagctgccgactcattcattcaaa 79
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 142 ctgtacttggactgaagggagctcc 166
|||| ||||||||||||||||||||
Sbjct: 162 ctgtgcttggactgaagggagctcc 186
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccacttatgg 24
||||||||||||||||||| ||||
Sbjct: 13 gagctttcttcagtccactcatgg 36
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 100 aatgagtgaatgatgcgggagacaaatt 127
|||| ||||||||||||||||| |||||
Sbjct: 119 aatgtgtgaatgatgcgggagataaatt 146
>42783_zma-MIR319d:mirbase
Length = 212
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattcatccaaatgc 70
|||||||||||||||||||| ||| ||||
Sbjct: 63 attagctgccgactcattcacccacatgc 91
>41410_ptc-MIR319g:mirbase
Length = 204
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 142 ctgtacttggactgaagggagctcc 166
|||| ||||||||||||||||||||
Sbjct: 170 ctgtgcttggactgaagggagctcc 194
>40369_rco-MIR319c:mirbase
Length = 188
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 142 ctgtacttggactgaagggagctcc 166
|||| ||||||||||||||||||||
Sbjct: 157 ctgtgcttggactgaagggagctcc 181
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 100 aatgagtgaatgatgcgggagacaaatt 127
|||| ||||||||||||||||| |||||
Sbjct: 114 aatgtgtgaatgatgcgggagataaatt 141
>42642_tae-MIR319:mirbase
Length = 211
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctcc 166
||||||||||||||||||||
Sbjct: 183 cttggactgaagggagctcc 202
>41770_bdi-MIR319:mirbase
Length = 280
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctcc 166
||||||||||||||||||||
Sbjct: 225 cttggactgaagggagctcc 244
>41635_vvi-MIR319b:mirbase
Length = 194
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctcc 166
||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctcc 181
>41026_pvu-MIR319c:mirbase
Length = 734
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctcc 166
||||||||||||||||||||
Sbjct: 409 cttggactgaagggagctcc 428
>40703_mtr-MIR319:mirbase
Length = 207
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctcc 166
||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctcc 187
>40368_rco-MIR319b:mirbase
Length = 179
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctcc 166
||||||||||||||||||||
Sbjct: 153 cttggactgaagggagctcc 172
>39740_smo-MIR319:mirbase
Length = 215
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctcc 166
||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctcc 204
>39484_ppt-MIR319e:mirbase
Length = 174
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctcc 166
||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctcc 166
>39483_ppt-MIR319d:mirbase
Length = 170
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctcc 166
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>39482_ppt-MIR319c:mirbase
Length = 189
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctcc 166
||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcc 173
>39481_ppt-MIR319b:mirbase
Length = 160
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctcc 166
||||||||||||||||||||
Sbjct: 140 cttggactgaagggagctcc 159
>39480_ppt-MIR319a:mirbase
Length = 169
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctcc 166
||||||||||||||||||||
Sbjct: 148 cttggactgaagggagctcc 167
