miRNEST 2.0, an integrative microRNA resource :: BLAST
>41053_ghr-MIR390c:mirbase
Length = 114
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggatgatccatctttcaagctttcatgcatgtatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatggatgatccatctttcaagctttcatgcatgtatgtt 70
Query: 61 atttgatcctcatatagcgctatccatcctgagttt 96
||||||||||||||||||||||||||||||||||||
Sbjct: 71 atttgatcctcatatagcgctatccatcctgagttt 106
>41052_ghr-MIR390b:mirbase
Length = 132
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggatgatccatctttcaagctttcatgcatgtatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccatggatgatccatctttcaagctttcatgcatgtatgtt 77
Query: 61 atttgatcctcatatagcgctatccatcctgagttt 96
||||||||||||||||||||||||||||||||||||
Sbjct: 78 atttgatcctcatatagcgctatccatcctgagttt 113
>41051_ghr-MIR390a:mirbase
Length = 124
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggatgatccatctttcaagctttcatgcatgtatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatggatgatccatctttcaagctttcatgcatgtatgtt 74
Query: 61 atttgatcctcatatagcgctatccatcctgagttt 96
||||||||||||||||||||||||||||||||||||
Sbjct: 75 atttgatcctcatatagcgctatccatcctgagttt 110
>40468_gma-MIR390a:mirbase
Length = 105
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggatgatc 31
|||||||||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatggatgatc 41
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gcgctatccatcctgagttt 96
||||||||||||||||||||
Sbjct: 67 gcgctatccatcctgagttt 86
>40467_gma-MIR390a:mirbase
Length = 105
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggatgatc 31
|||||||||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatggatgatc 41
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gcgctatccatcctgagttt 96
||||||||||||||||||||
Sbjct: 67 gcgctatccatcctgagttt 86
>40372_rco-MIR390b:mirbase
Length = 122
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggatg 28
||||||||||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgccatggatg 33
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 tatagcgctatccatcctgagttt 96
||||||||||||||||||||||||
Sbjct: 92 tatagcgctatccatcctgagttt 115
>41130_tcc-MIR390a:mirbase
Length = 129
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggatgatc 31
||||||||||||||||||||||| |||||||
Sbjct: 21 aagctcaggagggatagcgccattgatgatc 51
Score = 50.1 bits (25), Expect = 3e-07
Identities = 32/33 (96%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 64 tgatcctcatatagcgctatccatcctgagttt 96
|||||||||| ||||||||||||||||||||||
Sbjct: 76 tgatcctcat-tagcgctatccatcctgagttt 107
>41237_csi-MIR390:mirbase
Length = 154
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgg 25
|||||||||||||||||||||||||
Sbjct: 21 aagctcaggagggatagcgccatgg 45
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gcgctatccatcctgagttt 96
||||||||||||||||||||
Sbjct: 98 gcgctatccatcctgagttt 117
>40073_ath-MIR390b:mirbase
Length = 120
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgg 25
|||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39
>41640_vvi-MIR390:mirbase
Length = 140
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34
>41415_ptc-MIR390c:mirbase
Length = 123
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34
>41413_ptc-MIR390a:mirbase
Length = 119
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34
>40294_bna-MIR390c:mirbase
Length = 128
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 23 aagctcaggagggatagcgccatg 46
>40292_bna-MIR390a:mirbase
Length = 144
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 33 aagctcaggagggatagcgccatg 56
>40072_ath-MIR390a:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccatg 41
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gcgctatccatcctgagttt 96
||||||||||||||||||||
Sbjct: 69 gcgctatccatcctgagttt 88
>39863_aly-MIR390b:mirbase
Length = 127
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgccatg 42
>39862_aly-MIR390a:mirbase
Length = 129
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 29 aagctcaggagggatagcgccatg 52
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gcgctatccatcctgagttt 96
||||||||||||||||||||
Sbjct: 80 gcgctatccatcctgagttt 99
>41131_tcc-MIR390b:mirbase
Length = 120
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccat 23
|||||||||||||||||||||||
Sbjct: 21 aagctcaggagggatagcgccat 43
>40705_mtr-MIR390:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccat 23
|||||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgccat 28
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gcgctatccatcctgagttt 96
||||||||||||||||||||
Sbjct: 76 gcgctatccatcctgagttt 95
>40293_bna-MIR390b:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccat 23
|||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccat 40
>39485_ppt-MIR390a:mirbase
Length = 137
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccat 23
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>42785_zma-MIR390b:mirbase
Length = 192
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42784_zma-MIR390a:mirbase
Length = 181
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42565_sbi-MIR390:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 3 aagctcaggagggatagcgcc 23
>41996_osa-MIR390:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41773_bdi-MIR390b:mirbase
Length = 186
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41772_bdi-MIR390:mirbase
Length = 209
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51
>41416_ptc-MIR390d:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gcgctatccatcctgagttt 96
||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagttt 98
>41414_ptc-MIR390b:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gcgctatccatcctgagttt 96
||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagttt 98
>40371_rco-MIR390a:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgcc 26
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gcgctatccatcctgagttt 96
||||||||||||||||||||
Sbjct: 82 gcgctatccatcctgagttt 101
>39486_ppt-MIR390b:mirbase
Length = 175
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>39487_ppt-MIR390c:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 agctcaggagggatagcgcc 21
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
