miRNEST 2.0, an integrative microRNA resource :: BLAST
>40360_rco-MIR171b:mirbase
Length = 91
Score = 75.8 bits (38), Expect = 4e-15
Identities = 72/82 (87%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1 gagatattggtgcggttcaatcggagaactttgctctttgtttagagagctatgttgttt 60
|||||||||||||||||||||| |||| | ||||||| | | ||||| | ||||||||
Sbjct: 5 gagatattggtgcggttcaatcagagatcattgctctatatatagagcttt-tgttgttt 63
Query: 61 gattgagccgtgccaatatcac 82
||||||||||||||||||||||
Sbjct: 64 gattgagccgtgccaatatcac 85
>41625_vvi-MIR171d:mirbase
Length = 100
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 tgttgtttgattgagccgtgccaatatcac 82
||||||||||||||||||||||||||||||
Sbjct: 60 tgttgtttgattgagccgtgccaatatcac 89
>41382_ptc-MIR171b:mirbase
Length = 103
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 46 agagctatgttgtttgattgagccgtgccaatatcac 82
|||||| | ||||||||||||||||||||||||||||
Sbjct: 57 agagctctattgtttgattgagccgtgccaatatcac 93
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gagatattggtgcggttcaatc 22
||||||||||||||||||||||
Sbjct: 12 gagatattggtgcggttcaatc 33
>39851_aly-MIR171c:mirbase
Length = 111
Score = 58.0 bits (29), Expect = 1e-09
Identities = 72/84 (85%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 1 gagatattggtgcggttcaatcggagaactttgctctttg--tttagagagctatgttgt 58
|||||||||||||||||||||| || |||| | |||||| |||| ||| | | ||||
Sbjct: 14 gagatattggtgcggttcaatcagaaaactgtactcttttgttttaaagatcggt-ttgt 72
Query: 59 ttgattgagccgtgccaatatcac 82
||||||||||||||||||||||||
Sbjct: 73 ttgattgagccgtgccaatatcac 96
>41381_ptc-MIR171a:mirbase
Length = 104
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 ttgtttgattgagccgtgccaatatcac 82
||||||||||||||||||||||||||||
Sbjct: 67 ttgtttgattgagccgtgccaatatcac 94
>40318_bra-MIR171a:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 ttgtttgattgagccgtgccaatatcac 82
||||||||||||||||||||||||||||
Sbjct: 57 ttgtttgattgagccgtgccaatatcac 84
>40305_bol-MIR171a:mirbase
Length = 96
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 ttgtttgattgagccgtgccaatatcac 82
||||||||||||||||||||||||||||
Sbjct: 63 ttgtttgattgagccgtgccaatatcac 90
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gagatattggtgcggttcaatc 22
||||||||||||||||||||||
Sbjct: 8 gagatattggtgcggttcaatc 29
>40289_bna-MIR171e:mirbase
Length = 92
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 ttgtttgattgagccgtgccaatatcac 82
||||||||||||||||||||||||||||
Sbjct: 62 ttgtttgattgagccgtgccaatatcac 89
>40288_bna-MIR171d:mirbase
Length = 96
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 ttgtttgattgagccgtgccaatatcac 82
||||||||||||||||||||||||||||
Sbjct: 63 ttgtttgattgagccgtgccaatatcac 90
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gagatattggtgcggttcaatc 22
||||||||||||||||||||||
Sbjct: 8 gagatattggtgcggttcaatc 29
>42546_sbi-MIR171a:mirbase
Length = 161
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 56 tgtttgattgagccgtgccaatatcac 82
|||||||||||||||||||||||||||
Sbjct: 118 tgtttgattgagccgtgccaatatcac 144
>41181_aqc-MIR171e:mirbase
Length = 102
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 54 gttgtttgattgagccgtgccaatatc 80
|||||||||||||||||||||||||||
Sbjct: 27 gttgtttgattgagccgtgccaatatc 1
>41177_aqc-MIR171a:mirbase
Length = 102
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 54 gttgtttgattgagccgtgccaatatc 80
|||||||||||||||||||||||||||
Sbjct: 74 gttgtttgattgagccgtgccaatatc 100
>41119_tcc-MIR171d:mirbase
Length = 117
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gagatattggtgcggttcaatcggaga 27
|||||||||||||||||||||||||||
Sbjct: 19 gagatattggtgcggttcaatcggaga 45
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 53 tgttgtttgattgagccgtgccaatatcac 82
|||| |||||||||||||||||||||||||
Sbjct: 70 tgttatttgattgagccgtgccaatatcac 99
>40700_mtr-MIR171f:mirbase
Length = 95
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 53 tgttgtttgattgagccgtgccaatatcac 82
|||| |||||||||||||||||||||||||
Sbjct: 60 tgttatttgattgagccgtgccaatatcac 89
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gagatattggtgcggttcaatc 22
||||||||||||||||||||||
Sbjct: 4 gagatattggtgcggttcaatc 25
>40457_gma-MIR171c:mirbase
Length = 104
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 53 tgttgtttgattgagccgtgccaatatcac 82
|||| |||||||||||||||||||||||||
Sbjct: 65 tgttatttgattgagccgtgccaatatcac 94
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gagatattggtgcggttcaatc 22
||||||||||||||||||||||
Sbjct: 11 gagatattggtgcggttcaatc 32
>40061_ath-MIR171b:mirbase
Length = 117
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 53 tgttgtttgattgagccgtgccaatatcac 82
||||||| ||||||||||||||||||||||
Sbjct: 68 tgttgttcgattgagccgtgccaatatcac 97
>39850_aly-MIR171b:mirbase
Length = 137
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 53 tgttgtttgattgagccgtgccaatatcac 82
||||||| ||||||||||||||||||||||
Sbjct: 79 tgttgttcgattgagccgtgccaatatcac 108
>42762_zma-MIR171b:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatcac 82
|||||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatcac 84
>42556_sbi-MIR171k:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatcac 82
|||||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatcac 84
>41983_osa-MIR171c:mirbase
Length = 99
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatcac 82
|||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcac 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3 gatattggtgcggttcaatc 22
||||||||||||||||||||
Sbjct: 11 gatattggtgcggttcaatc 30
>41982_osa-MIR171b:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatcac 82
|||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatcac 92
>41766_bdi-MIR171c:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatcac 82
|||||||||||||||||||||||||
Sbjct: 62 tttgattgagccgtgccaatatcac 86
>41624_vvi-MIR171c:mirbase
Length = 103
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatcac 82
|||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatcac 92
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 gatattggtgcggttcaat 21
|||||||||||||||||||
Sbjct: 12 gatattggtgcggttcaat 30
>41216_crt-MIR171:mirbase
Length = 201
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatcac 82
|||||||||||||||||||||||||
Sbjct: 159 tttgattgagccgtgccaatatcac 183
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 gatattggtgcggttcaat 21
|||||||||||||||||||
Sbjct: 104 gatattggtgcggttcaat 122
>41121_tcc-MIR171f:mirbase
Length = 117
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatcac 82
|||||||||||||||||||||||||
Sbjct: 75 tttgattgagccgtgccaatatcac 99
>40359_rco-MIR171a:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatcac 82
|||||||||||||||||||||||||
Sbjct: 62 tttgattgagccgtgccaatatcac 86
>40062_ath-MIR171c:mirbase
Length = 116
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatcac 82
|||||||||||||||||||||||||
Sbjct: 85 tttgattgagccgtgccaatatcac 109
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gagatattggtgcggttcaatc 22
||||||||||||||||||||||
Sbjct: 27 gagatattggtgcggttcaatc 48
>42769_zma-MIR171i:mirbase
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 ttgattgagccgtgccaatatcac 82
||||||||||||||||||||||||
Sbjct: 64 ttgattgagccgtgccaatatcac 87
>42766_zma-MIR171f:mirbase
Length = 155
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 ttgattgagccgtgccaatatcac 82
||||||||||||||||||||||||
Sbjct: 114 ttgattgagccgtgccaatatcac 137
>41538_sly-MIR171a:mirbase
Length = 122
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 gtttgattgagccgtgccaatatc 80
||||||||||||||||||||||||
Sbjct: 84 gtttgattgagccgtgccaatatc 107
>41182_aqc-MIR171f:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 47 gagctatgttgtttgattgagccgtgccaatatcac 82
||||| |||| ||| |||||||||||||||||||||
Sbjct: 49 gagctttgttatttaattgagccgtgccaatatcac 84
>40701_mtr-MIR171g:mirbase
Length = 105
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 gtttgattgagccgtgccaatatc 80
||||||||||||||||||||||||
Sbjct: 77 gtttgattgagccgtgccaatatc 100
>40698_mtr-MIR171d:mirbase
Length = 105
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 gtttgattgagccgtgccaatatc 80
||||||||||||||||||||||||
Sbjct: 77 gtttgattgagccgtgccaatatc 100
>40321_bra-MIR171d:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 ttgtttgattgagccgtgccaatatcac 82
||||| ||||||||||||||||||||||
Sbjct: 65 ttgttcgattgagccgtgccaatatcac 92
>40320_bra-MIR171c:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 ttgtttgattgagccgtgccaatatcac 82
||||| ||||||||||||||||||||||
Sbjct: 59 ttgttcgattgagccgtgccaatatcac 86
>40319_bra-MIR171b:mirbase
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 ttgtttgattgagccgtgccaatatcac 82
||||| ||||||||||||||||||||||
Sbjct: 66 ttgttcgattgagccgtgccaatatcac 93
>40287_bna-MIR171c:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 ttgtttgattgagccgtgccaatatcac 82
||||| ||||||||||||||||||||||
Sbjct: 59 ttgttcgattgagccgtgccaatatcac 86
>40286_bna-MIR171b:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 ttgtttgattgagccgtgccaatatcac 82
||||| ||||||||||||||||||||||
Sbjct: 65 ttgttcgattgagccgtgccaatatcac 92
>40285_bna-MIR171a:mirbase
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 ttgtttgattgagccgtgccaatatcac 82
||||| ||||||||||||||||||||||
Sbjct: 66 ttgttcgattgagccgtgccaatatcac 93
>42770_zma-MIR171j:mirbase
Length = 129
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatcac 82
|||||||||||||||||||||||
Sbjct: 90 tgattgagccgtgccaatatcac 112
>42547_sbi-MIR171b:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatcac 82
|||||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatcac 115
>41986_osa-MIR171f:mirbase
Length = 127
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatcac 82
|||||||||||||||||||||||
Sbjct: 97 tgattgagccgtgccaatatcac 119
>41389_ptc-MIR171i:mirbase
Length = 129
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatc 80
|||||||||||||||||||||||
Sbjct: 98 tttgattgagccgtgccaatatc 120
>41388_ptc-MIR171h:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatcac 82
|||||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatcac 93
>41387_ptc-MIR171g:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatcac 82
|||||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatcac 93
>41180_aqc-MIR171d:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatc 80
|||||||||||||||||||||||
Sbjct: 82 tttgattgagccgtgccaatatc 104
>41178_aqc-MIR171b:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatcac 82
|||||||||||||||||||||||
Sbjct: 55 tgattgagccgtgccaatatcac 77
>41122_tcc-MIR171g:mirbase
Length = 115
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatcac 82
|||||||||||||||||||||||
Sbjct: 75 tgattgagccgtgccaatatcac 97
>41120_tcc-MIR171e:mirbase
Length = 161
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatc 80
|||||||||||||||||||||||
Sbjct: 119 tttgattgagccgtgccaatatc 141
>40364_rco-MIR171f:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatc 80
|||||||||||||||||||||||
Sbjct: 84 tttgattgagccgtgccaatatc 106
>40362_rco-MIR171d:mirbase
Length = 124
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatc 80
|||||||||||||||||||||||
Sbjct: 97 tttgattgagccgtgccaatatc 119
>42641_tae-MIR171b:mirbase
Length = 138
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 gattgagccgtgccaatatcac 82
||||||||||||||||||||||
Sbjct: 90 gattgagccgtgccaatatcac 111
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 5 tattggtgcggttcaatcggaga 27
|||||||||||||||||| ||||
Sbjct: 32 tattggtgcggttcaatcagaga 54
>41630_vvi-MIR171i:mirbase
Length = 103
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatca 81
||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatca 90
>41622_vvi-MIR171a:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatca 81
||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatca 89
>41179_aqc-MIR171c:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 47 gagctatgttgtttgattgagccgtgccaatatc 80
||||| |||| ||| |||||||||||||||||||
Sbjct: 34 gagctttgttatttaattgagccgtgccaatatc 1
>40697_mtr-MIR171c:mirbase
Length = 105
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatat 79
||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatat 99
>40454_gma-MIR171a:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 53 tgttgtttgattgagccgtgccaatatcac 82
|||| ||| |||||||||||||||||||||
Sbjct: 61 tgttttttcattgagccgtgccaatatcac 90
>39736_smo-MIR171a:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 gattgagccgtgccaatatcac 82
||||||||||||||||||||||
Sbjct: 103 gattgagccgtgccaatatcac 124
