miRNEST 2.0, an integrative microRNA resource :: BLAST
>40070_ath-MIR319b:mirbase
Length = 172
Score = 272 bits (137), Expect = 8e-74
Identities = 161/169 (95%)
Strand = Plus / Plus
Query: 4 gagctttcttcggtccactcatagaataatatgtgagatttaattgactctcgactcatt 63
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 4 gagctttcttcggtccactcatggagtaatatgtgagatttaattgactctcgactcatt 63
Query: 64 catccaaataccaaatgaaagaatatgtagacatatggtaaatgaatgaatgatgctaga 123
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||
Sbjct: 64 catccaaataccaaatgaaagaatttgttctcatatggtaaatgaatgaatgatgcgaga 123
Query: 124 gacaaattgaatcttcacttctctatgcttggactgaagggagctccct 172
|||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gacaaattgagtcttcacttctctatgcttggactgaagggagctccct 172
>39859_aly-MIR319b:mirbase
Length = 246
Score = 272 bits (137), Expect = 8e-74
Identities = 161/169 (95%)
Strand = Plus / Plus
Query: 4 gagctttcttcggtccactcatagaataatatgtgagatttaattgactctcgactcatt 63
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 43 gagctttcttcggtccactcatggagtaatatgtgagatttaattgactctcgactcatt 102
Query: 64 catccaaataccaaatgaaagaatatgtagacatatggtaaatgaatgaatgatgctaga 123
||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||
Sbjct: 103 catccaaataccaaatgaaagaacatgttctcatatggtaaatgaatgaatgatgcgaga 162
Query: 124 gacaaattgaatcttcacttctctatgcttggactgaagggagctccct 172
|||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gacaaattgagtcttcacttctctatgcttggactgaagggagctccct 211
>40704_mtr-MIR319b:mirbase
Length = 180
Score = 75.8 bits (38), Expect = 1e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 103 aaatgaatgaatgatgctagagacaaattgaatcttcacttctctatgcttggactgaag 162
|||||| |||||||||| ||||||||||||||||| | || |||| ||||||||||||
Sbjct: 107 aaatgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaag 166
Query: 163 ggagctccct 172
||||||||||
Sbjct: 167 ggagctccct 176
>41636_vvi-MIR319c:mirbase
Length = 182
Score = 71.9 bits (36), Expect = 2e-13
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 101 gtaaatgaatgaatgatgctagagacaaattgaatcttcacttctctatgcttggactga 160
|||||||| |||||||||| ||||||||||| ||||| | || || ||||||||||||
Sbjct: 100 gtaaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggactga 159
Query: 161 agggagctccct 172
||||||||||||
Sbjct: 160 agggagctccct 171
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 cgactcattcatccaaatac 74
||||||||||||||||||||
Sbjct: 62 cgactcattcatccaaatac 81
>41282_ctr-MIR319:mirbase
Length = 186
Score = 71.9 bits (36), Expect = 2e-13
Identities = 65/72 (90%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 101 gtaaatgaatgaatgatgctagagacaaattgaatcttca-cttctctatgcttggactg 159
|||||||| |||||||||| ||||||||||||||||| | |||| || |||||||||||
Sbjct: 106 gtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttc-ctgtgcttggactg 164
Query: 160 aagggagctccc 171
||||||||||||
Sbjct: 165 aagggagctccc 176
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 gggagctttcttcggtccact 22
|||||||||||||||||||||
Sbjct: 8 gggagctttcttcggtccact 28
>40367_rco-MIR319a:mirbase
Length = 211
Score = 65.9 bits (33), Expect = 9e-12
Identities = 65/73 (89%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 101 gtaaatgaatgaatgatgctagagacaaattgaatcttca-cttctctatgcttggactg 159
|||||||| |||||||||| ||||||||||||||||| | |||| || | |||||||||
Sbjct: 135 gtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttc-ctgtacttggactg 193
Query: 160 aagggagctccct 172
|||||||||||||
Sbjct: 194 aagggagctccct 206
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 cgactcattcatccaaatac 74
||||||||||||||||||||
Sbjct: 56 cgactcattcatccaaatac 75
>40464_gma-MIR319a:mirbase
Length = 207
Score = 63.9 bits (32), Expect = 4e-11
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 105 atgaatgaatgatgctagagacaaattgaatcttcacttctctatgcttggactgaaggg 164
|||| |||||||||| ||||||||||||||||| | || || | ||||||||||||||
Sbjct: 122 atgagtgaatgatgcgggagacaaattgaatcttaagtttcctgtacttggactgaaggg 181
Query: 165 agctccct 172
||||||||
Sbjct: 182 agctccct 189
>40069_ath-MIR319a:mirbase
Length = 176
Score = 61.9 bits (31), Expect = 1e-10
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 102 taaatgaatgaatgatgctagagacaaattgaatcttcacttctctatgcttggactgaa 161
|||||||||||||||||| |||||||||| ||| | |||||| || ||||||||||
Sbjct: 104 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 163
Query: 162 gggagctccct 172
|||||||||||
Sbjct: 164 gggagctccct 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 cgactcattcatccaaatacc 75
|||||||||||||||||||||
Sbjct: 55 cgactcattcatccaaatacc 75
>39858_aly-MIR319a:mirbase
Length = 221
Score = 61.9 bits (31), Expect = 1e-10
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 102 taaatgaatgaatgatgctagagacaaattgaatcttcacttctctatgcttggactgaa 161
|||||||||||||||||| |||||||||| ||| | |||||| || ||||||||||
Sbjct: 127 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 186
Query: 162 gggagctccct 172
|||||||||||
Sbjct: 187 gggagctccct 197
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 cgactcattcatccaaatacc 75
|||||||||||||||||||||
Sbjct: 78 cgactcattcatccaaatacc 98
>40465_gma-MIR319b:mirbase
Length = 208
Score = 60.0 bits (30), Expect = 6e-10
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 103 aaatgaatgaatgatgctagagacaaattgaatcttcacttctctatgcttggactgaag 162
|||||| |||||||||| |||||||||||| |||| | || || | ||||||||||||
Sbjct: 121 aaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttggactgaag 180
Query: 163 ggagctccct 172
||||||||||
Sbjct: 181 ggagctccct 190
>41405_ptc-MIR319b:mirbase
Length = 185
Score = 58.0 bits (29), Expect = 2e-09
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 101 gtaaatgaatgaatgatgctagagacaaattgaatctt-cacttctctatgcttggactg 159
|||||||||||| |||||| |||||||||| |||||| ||||| |||| ||||||||
Sbjct: 106 gtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttc-ctatcattggactg 164
Query: 160 aagggagctccct 172
|||||||||||||
Sbjct: 165 aagggagctccct 177
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 cgactcattcatccaaatac 74
||||||||||||||||||||
Sbjct: 62 cgactcattcatccaaatac 81
>41404_ptc-MIR319a:mirbase
Length = 188
Score = 58.0 bits (29), Expect = 2e-09
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 101 gtaaatgaatgaatgatgctagagacaaattgaatcttca-cttctctatgcttggactg 159
|||||||| |||||||||| ||||||||||||||| | | |||| || | |||||||||
Sbjct: 109 gtaaatgagtgaatgatgcgggagacaaattgaatcctaagcttc-ctgtacttggactg 167
Query: 160 aagggagctccct 172
|||||||||||||
Sbjct: 168 aagggagctccct 180
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 cgactcattcatccaaatac 74
||||||||||||||||||||
Sbjct: 62 cgactcattcatccaaatac 81
>40369_rco-MIR319c:mirbase
Length = 188
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 136 cttcacttctctatgcttggactgaagggagctccct 172
|||| ||||||| ||||||||||||||||||||||||
Sbjct: 147 cttctcttctctgtgcttggactgaagggagctccct 183
>41407_ptc-MIR319d:mirbase
Length = 193
Score = 56.0 bits (28), Expect = 9e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 141 cttctctatgcttggactgaagggagctccct 172
||||||| ||||||||||||||||||||||||
Sbjct: 154 cttctctgtgcttggactgaagggagctccct 185
>41406_ptc-MIR319c:mirbase
Length = 196
Score = 56.0 bits (28), Expect = 9e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 141 cttctctatgcttggactgaagggagctccct 172
||||||| ||||||||||||||||||||||||
Sbjct: 157 cttctctgtgcttggactgaagggagctccct 188
>42642_tae-MIR319:mirbase
Length = 211
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 148 atgcttggactgaagggagctccct 172
|||||||||||||||||||||||||
Sbjct: 180 atgcttggactgaagggagctccct 204
>41770_bdi-MIR319:mirbase
Length = 280
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 148 atgcttggactgaagggagctccct 172
|||||||||||||||||||||||||
Sbjct: 222 atgcttggactgaagggagctccct 246
>41638_vvi-MIR319f:mirbase
Length = 193
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 149 tgcttggactgaagggagctccct 172
||||||||||||||||||||||||
Sbjct: 159 tgcttggactgaagggagctccct 182
>40703_mtr-MIR319:mirbase
Length = 207
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 149 tgcttggactgaagggagctccct 172
||||||||||||||||||||||||
Sbjct: 166 tgcttggactgaagggagctccct 189
>41635_vvi-MIR319b:mirbase
Length = 194
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 cttggactgaagggagctccct 172
||||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctccct 183
>41410_ptc-MIR319g:mirbase
Length = 204
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 149 tgcttggactgaagggagctcc 170
||||||||||||||||||||||
Sbjct: 173 tgcttggactgaagggagctcc 194
>41409_ptc-MIR319f:mirbase
Length = 202
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 149 tgcttggactgaagggagctcc 170
||||||||||||||||||||||
Sbjct: 171 tgcttggactgaagggagctcc 192
>41185_aqc-MIR319:mirbase
Length = 177
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 cttggactgaagggagctccct 172
||||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctccct 175
>40368_rco-MIR319b:mirbase
Length = 179
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 cttggactgaagggagctccct 172
||||||||||||||||||||||
Sbjct: 153 cttggactgaagggagctccct 174
>39740_smo-MIR319:mirbase
Length = 215
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 cttggactgaagggagctccct 172
||||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctccct 206
>41026_pvu-MIR319c:mirbase
Length = 734
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 150 gcttggactgaagggagctcc 170
|||||||||||||||||||||
Sbjct: 408 gcttggactgaagggagctcc 428
>40466_gma-MIR319c:mirbase
Length = 221
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 142 ttctctatgcttggactgaagggagctcc 170
|||||| ||||||||||||| ||||||||
Sbjct: 173 ttctctgtgcttggactgaaaggagctcc 201
>39484_ppt-MIR319e:mirbase
Length = 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 151 cttggactgaagggagctccc 171
|||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctccc 167
>39483_ppt-MIR319d:mirbase
Length = 170
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 151 cttggactgaagggagctccc 171
|||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctccc 165
>39482_ppt-MIR319c:mirbase
Length = 189
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 151 cttggactgaagggagctccc 171
|||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctccc 174
>42783_zma-MIR319d:mirbase
Length = 212
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 149 tgcttggactgaagggagctccct 172
|||||||||||||||| |||||||
Sbjct: 171 tgcttggactgaagggtgctccct 194
>42781_zma-MIR319b:mirbase
Length = 213
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 149 tgcttggactgaagggagctccct 172
|||||||||||||||| |||||||
Sbjct: 172 tgcttggactgaagggtgctccct 195
>42563_sbi-MIR319:mirbase
Length = 249
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 149 tgcttggactgaagggagctccct 172
|||||||||||||||| |||||||
Sbjct: 188 tgcttggactgaagggtgctccct 211
>41995_osa-MIR319b:mirbase
Length = 197
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 149 tgcttggactgaagggagctccct 172
|||||||||||||||| |||||||
Sbjct: 165 tgcttggactgaagggtgctccct 188
>41639_vvi-MIR319g:mirbase
Length = 222
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 152 ttggactgaagggagctccc 171
||||||||||||||||||||
Sbjct: 192 ttggactgaagggagctccc 211
>41544_sly-MIR319:mirbase
Length = 168
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 151 cttggactgaagggagctcc 170
||||||||||||||||||||
Sbjct: 149 cttggactgaagggagctcc 168
>39481_ppt-MIR319b:mirbase
Length = 160
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 151 cttggactgaagggagctcc 170
||||||||||||||||||||
Sbjct: 140 cttggactgaagggagctcc 159
>39480_ppt-MIR319a:mirbase
Length = 169
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 151 cttggactgaagggagctcc 170
||||||||||||||||||||
Sbjct: 148 cttggactgaagggagctcc 167
