miRNEST 2.0, an integrative microRNA resource :: BLAST
>41218_csi-MIR159:mirbase
Length = 216
Score = 73.8 bits (37), Expect = 4e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggattttgca-gggtaaatcaagctgctgatctatgga 59
|||||||||||||||||||||||| | | ||| |||||||| ||||||||| |||||||
Sbjct: 14 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 73
Query: 60 ttccacagtccta 72
| |||||||||||
Sbjct: 74 tcccacagtccta 86
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 143 ctttctttggattgaagggagctc 166
|||| |||||||||||||||||||
Sbjct: 181 ctttttttggattgaagggagctc 204
>41301_ptc-MIR159c:mirbase
Length = 183
Score = 63.9 bits (32), Expect = 4e-11
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatggat 60
|||||||||||||||||| ||||| | |||| ||||| || |||||||| | |||||||
Sbjct: 13 gagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgga- 71
Query: 61 tccacagtccta 72
||||||||||||
Sbjct: 72 tccacagtccta 83
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 90 ggataggcttgcggcttgcatatgttaggagctttatt 127
||||||| ||||||||||||||| | ||||||||||||
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagctttatt 134
>41300_ptc-MIR159b:mirbase
Length = 187
Score = 63.9 bits (32), Expect = 4e-11
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 99 tgcggcttgcatatgttaggagctttattacctctttgttttatctttctttggattgaa 158
|||||||||||||| | |||||||||||||||| |||| |||||| |||||||||||
Sbjct: 110 tgcggcttgcatatctcaggagctttattacct-aatgttagatctttttttggattgaa 168
Query: 159 gggagctc 166
||||||||
Sbjct: 169 gggagctc 176
>41299_ptc-MIR159a:mirbase
Length = 183
Score = 63.9 bits (32), Expect = 4e-11
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatggat 60
|||||||||||||||||| ||||| | |||| ||||| || |||||||| | |||||||
Sbjct: 13 gagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgga- 71
Query: 61 tccacagtccta 72
||||||||||||
Sbjct: 72 tccacagtccta 83
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 90 ggataggcttgcggcttgcatatgttaggagctttatt 127
||||||| ||||||||||||||| | ||||||||||||
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagctttatt 134
>40338_rco-MIR159:mirbase
Length = 180
Score = 63.9 bits (32), Expect = 4e-11
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatggat 60
|||||||||||||||||| ||||||| ||| ||||| || ||||||||| ||||||||
Sbjct: 6 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 65
Query: 61 tccacagtccta 72
|||||| ||||
Sbjct: 66 cccacagcccta 77
Score = 58.0 bits (29), Expect = 2e-09
Identities = 66/77 (85%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 90 ggataggcttgcggcttgcatatgttaggagctttattacctctttgttttatctttctt 149
||||||||||| ||||||||||| | |||||||| ||||||| | | || ||| || ||
Sbjct: 98 ggataggcttgtggcttgcatatctcaggagcttcattacct-tgtattagatccttgtt 156
Query: 150 tggattgaagggagctc 166
|||||||||||||||||
Sbjct: 157 tggattgaagggagctc 173
>41528_sly-MIR159:mirbase
Length = 177
Score = 58.0 bits (29), Expect = 2e-09
Identities = 57/64 (89%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 105 ttgcatatgttaggagctttatt--acctctttgttttatctttctttggattgaaggga 162
|||||||||| |||||||||||| ||| |||||||| ||| || |||||||||||||||
Sbjct: 113 ttgcatatgtcaggagctttattttacc-ctttgtttgatcattttttggattgaaggga 171
Query: 163 gctc 166
||||
Sbjct: 172 gctc 175
>40657_mtr-MIR159a:mirbase
Length = 183
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 136 gttttatctttctttggattgaagggagctc 166
|||| ||||||||||||||||||||||||||
Sbjct: 140 gtttaatctttctttggattgaagggagctc 170
>41572_vvi-MIR159c:mirbase
Length = 190
Score = 48.1 bits (24), Expect = 2e-06
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatggat 60
|||||||||||||||||| ||||| | || | ||||| || ||||||||| |||||||
Sbjct: 11 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 70
Query: 61 tccacagtccta 72
|||||| ||||
Sbjct: 71 cccacagcccta 82
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 90 ggataggcttgcggcttgcatatgttaggagct 122
||||||||||| ||||||||||| | |||||||
Sbjct: 103 ggataggcttgtggcttgcatatctcaggagct 135
>40432_gma-MIR159a:mirbase
Length = 214
Score = 48.1 bits (24), Expect = 2e-06
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatggat 60
|||||||||||||||||| |||||| || | |||| ||| ||||||| | ||||||||
Sbjct: 23 gagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctatggat 82
Query: 61 tccacagt 68
|||||||
Sbjct: 83 cccacagt 90
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 ttctttggattgaagggagctc 166
||||||||||||||||||||||
Sbjct: 172 ttctttggattgaagggagctc 193
>40397_ahy-MIR159:mirbase
Length = 197
Score = 48.1 bits (24), Expect = 2e-06
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatggat 60
|||||||||||||||||| ||||| | ||| ||||| || ||||||| | ||||||||
Sbjct: 5 gagctccttgaagtccaacagagggtcttggtgggtagattgagctgctaagctatggat 64
Query: 61 tccacagt 68
|||||||
Sbjct: 65 cccacagt 72
>41024_pvu-MIR159a:mirbase
Length = 174
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 ttctttggattgaagggagctc 166
||||||||||||||||||||||
Sbjct: 150 ttctttggattgaagggagctc 171
Score = 40.1 bits (20), Expect = 5e-04
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatggat 60
|||||||||||||||||| |||||| || | |||| || ||||||| | ||||||||
Sbjct: 4 gagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatggat 63
Query: 61 tccacagt 68
|||||||
Sbjct: 64 cccacagt 71
>41023_pvu-MIR159a:mirbase
Length = 174
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 ttctttggattgaagggagctc 166
||||||||||||||||||||||
Sbjct: 150 ttctttggattgaagggagctc 171
Score = 40.1 bits (20), Expect = 5e-04
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggattttgcagggtaaatcaagctgctgatctatggat 60
|||||||||||||||||| |||||| || | |||| || ||||||| | ||||||||
Sbjct: 4 gagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatggat 63
Query: 61 tccacagt 68
|||||||
Sbjct: 64 cccacagt 71
>40311_bra-MIR159a:mirbase
Length = 185
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 ttctttggattgaagggagctc 166
||||||||||||||||||||||
Sbjct: 160 ttctttggattgaagggagctc 181
>40261_bna-MIR159:mirbase
Length = 183
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 ttctttggattgaagggagctc 166
||||||||||||||||||||||
Sbjct: 158 ttctttggattgaagggagctc 179
>40017_ath-MIR159b:mirbase
Length = 196
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 ttctttggattgaagggagctc 166
||||||||||||||||||||||
Sbjct: 165 ttctttggattgaagggagctc 186
>40016_ath-MIR159a:mirbase
Length = 184
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 ttctttggattgaagggagctc 166
||||||||||||||||||||||
Sbjct: 160 ttctttggattgaagggagctc 181
>39805_aly-MIR159b:mirbase
Length = 202
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 ttctttggattgaagggagctc 166
||||||||||||||||||||||
Sbjct: 166 ttctttggattgaagggagctc 187
Score = 42.1 bits (21), Expect = 1e-04
Identities = 52/61 (85%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggattttgcagggtaaa-tcaagctgctgatctatgga 59
|||||||||||||| ||| |||| ||| |||||||||| | |||||||| | |||||||
Sbjct: 17 gagctccttgaagttcaatggagggtttagcagggtaaagtaaagctgctaagctatgga 76
Query: 60 t 60
|
Sbjct: 77 t 77
>39804_aly-MIR159a:mirbase
Length = 222
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 ttctttggattgaagggagctc 166
||||||||||||||||||||||
Sbjct: 180 ttctttggattgaagggagctc 201
