miRNEST 2.0, an integrative microRNA resource :: BLAST
>41218_csi-MIR159:mirbase
Length = 216
Score = 341 bits (172), Expect = 1e-94
Identities = 186/193 (96%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 ggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgg 72
Query: 61 atcccacagtcctatgtatcagattttagggtttgtttctgatgatggtgatgataggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 atcccacagtcctatgtatcagattttagggtttgtttctgatgatggtgatgataggct 132
Query: 121 tgtggcttgcatatttctggaccttcattaccccttaagtttttaccccnnnnnnnggat 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 133 tgtggcttgcatatttctggaccttcattaccccttaagtttttacccctttttttggat 192
Query: 181 tgaagggagctct 193
|||||||||||||
Sbjct: 193 tgaagggagctct 205
>40338_rco-MIR159:mirbase
Length = 180
Score = 85.7 bits (43), Expect = 1e-17
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgg 60
||||||||||||||||||| ||||| ||| | | ||||| ||||||||||||||||||||
Sbjct: 5 ggagctccttgaagtccaatagaggatcttg-atgggtagattgagctgctgagctatgg 63
Query: 61 atcccacagtcctat 75
||||||||| |||||
Sbjct: 64 atcccacagccctat 78
Score = 56.0 bits (28), Expect = 1e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 113 gataggcttgtggcttgcatatttctggaccttcattacc 152
|||||||||||||||||||||| || ||| ||||||||||
Sbjct: 99 gataggcttgtggcttgcatatctcaggagcttcattacc 138
>41301_ptc-MIR159c:mirbase
Length = 183
Score = 73.8 bits (37), Expect = 4e-14
Identities = 72/81 (88%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgg 60
||||||||||||||||||| ||||||||| || ||||| ||| ||||||| ||||||||
Sbjct: 12 ggagctccttgaagtccaatagaggttcttgc-tgggtagattaagctgctaagctatgg 70
Query: 61 atcccacagtcctatgtatca 81
|| |||||||||||| |||||
Sbjct: 71 at-ccacagtcctatctatca 90
>41299_ptc-MIR159a:mirbase
Length = 183
Score = 73.8 bits (37), Expect = 4e-14
Identities = 72/81 (88%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgg 60
||||||||||||||||||| ||||||||| || ||||| ||| ||||||| ||||||||
Sbjct: 12 ggagctccttgaagtccaatagaggttcttgc-tgggtagattaagctgctaagctatgg 70
Query: 61 atcccacagtcctatgtatca 81
|| |||||||||||| |||||
Sbjct: 71 at-ccacagtcctatctatca 90
>40397_ahy-MIR159:mirbase
Length = 197
Score = 67.9 bits (34), Expect = 3e-12
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgg 60
||||||||||||||||||| ||||| ||| | ||||| ||||||||||| ||||||||
Sbjct: 4 ggagctccttgaagtccaacagagggtcttggt-gggtagattgagctgctaagctatgg 62
Query: 61 atcccacagt 70
||||||||||
Sbjct: 63 atcccacagt 72
>41572_vvi-MIR159c:mirbase
Length = 190
Score = 61.9 bits (31), Expect = 2e-10
Identities = 65/75 (86%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgg 60
||||||||||||||||||| ||||| ||| | ||||| ||||||||||||| |||||
Sbjct: 10 ggagctccttgaagtccaatagagggtcttact-gggtagattgagctgctgacttatgg 68
Query: 61 atcccacagtcctat 75
||||||||| |||||
Sbjct: 69 atcccacagccctat 83
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 113 gataggcttgtggcttgcatat 134
||||||||||||||||||||||
Sbjct: 104 gataggcttgtggcttgcatat 125
>40432_gma-MIR159a:mirbase
Length = 214
Score = 60.0 bits (30), Expect = 7e-10
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgg 60
||||||||||||||||||| |||| ||| | |||| |||||||||||| ||||||||
Sbjct: 22 ggagctccttgaagtccaattgaggatcttact-gggtgaattgagctgcttagctatgg 80
Query: 61 atcccacagt 70
||||||||||
Sbjct: 81 atcccacagt 90
>40435_gma-MIR159d:mirbase
Length = 103
Score = 56.0 bits (28), Expect = 1e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 35 gggtaaattgagctgctgagctatggatcccacagt 70
|||| |||||||||||| ||||||||||||||||||
Sbjct: 1 gggtgaattgagctgcttagctatggatcccacagt 36
>41300_ptc-MIR159b:mirbase
Length = 187
Score = 54.0 bits (27), Expect = 4e-08
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgg 60
||||||||||||||||||| ||| | || || ||||| || ||||||||||||||||
Sbjct: 12 ggagctccttgaagtccaatagaagctcctgct-gggtagatcgagctgctgagctatga 70
Query: 61 atcccacagtcctat 75
||||||||| |||||
Sbjct: 71 atcccacagccctat 85
>41024_pvu-MIR159a:mirbase
Length = 174
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 41 attgagctgctgagctatggatcccacagt 70
||||||||||| ||||||||||||||||||
Sbjct: 42 attgagctgcttagctatggatcccacagt 71
>41023_pvu-MIR159a:mirbase
Length = 174
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 41 attgagctgctgagctatggatcccacagt 70
||||||||||| ||||||||||||||||||
Sbjct: 42 attgagctgcttagctatggatcccacagt 71
>41528_sly-MIR159:mirbase
Length = 177
Score = 46.1 bits (23), Expect = 1e-05
Identities = 63/75 (84%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgg 60
||||||||||||||||||| | | |||| || || |||||||||||||||| ||||||
Sbjct: 2 ggagctccttgaagtccaacaaaaaatctaaca-ggttaaattgagctgctgacctatgg 60
Query: 61 atcccacagtcctat 75
|| || ||| |||||
Sbjct: 61 attcctcagccctat 75
