miRNEST 2.0, an integrative microRNA resource :: BLAST
>40070_ath-MIR319b:mirbase
Length = 172
Score = 266 bits (134), Expect = 5e-72
Identities = 158/166 (95%)
Strand = Plus / Plus
Query: 1 gagctttcttcggtccactcatagaataatatgtgagatttaattgactctcgactcatt 60
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 4 gagctttcttcggtccactcatggagtaatatgtgagatttaattgactctcgactcatt 63
Query: 61 catccaaataccaaatgaaagaatatgtagacatatggtaaatgaatgaatgatgctaga 120
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||
Sbjct: 64 catccaaataccaaatgaaagaatttgttctcatatggtaaatgaatgaatgatgcgaga 123
Query: 121 gacaaattgaatcttcacttctctatgcttggactgaagggagctc 166
|||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 124 gacaaattgagtcttcacttctctatgcttggactgaagggagctc 169
>39859_aly-MIR319b:mirbase
Length = 246
Score = 266 bits (134), Expect = 5e-72
Identities = 158/166 (95%)
Strand = Plus / Plus
Query: 1 gagctttcttcggtccactcatagaataatatgtgagatttaattgactctcgactcatt 60
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 43 gagctttcttcggtccactcatggagtaatatgtgagatttaattgactctcgactcatt 102
Query: 61 catccaaataccaaatgaaagaatatgtagacatatggtaaatgaatgaatgatgctaga 120
||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||
Sbjct: 103 catccaaataccaaatgaaagaacatgttctcatatggtaaatgaatgaatgatgcgaga 162
Query: 121 gacaaattgaatcttcacttctctatgcttggactgaagggagctc 166
|||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 163 gacaaattgagtcttcacttctctatgcttggactgaagggagctc 208
>40704_mtr-MIR319b:mirbase
Length = 180
Score = 69.9 bits (35), Expect = 6e-13
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 100 aaatgaatgaatgatgctagagacaaattgaatcttcacttctctatgcttggactgaag 159
|||||| |||||||||| ||||||||||||||||| | || |||| ||||||||||||
Sbjct: 107 aaatgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaag 166
Query: 160 ggagctc 166
|||||||
Sbjct: 167 ggagctc 173
>41282_ctr-MIR319:mirbase
Length = 186
Score = 67.9 bits (34), Expect = 2e-12
Identities = 63/70 (90%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 98 gtaaatgaatgaatgatgctagagacaaattgaatcttca-cttctctatgcttggactg 156
|||||||| |||||||||| ||||||||||||||||| | |||| || |||||||||||
Sbjct: 106 gtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttc-ctgtgcttggactg 164
Query: 157 aagggagctc 166
||||||||||
Sbjct: 165 aagggagctc 174
>41636_vvi-MIR319c:mirbase
Length = 182
Score = 65.9 bits (33), Expect = 9e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 98 gtaaatgaatgaatgatgctagagacaaattgaatcttcacttctctatgcttggactga 157
|||||||| |||||||||| ||||||||||| ||||| | || || ||||||||||||
Sbjct: 100 gtaaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggactga 159
Query: 158 agggagctc 166
|||||||||
Sbjct: 160 agggagctc 168
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 cgactcattcatccaaatac 71
||||||||||||||||||||
Sbjct: 62 cgactcattcatccaaatac 81
>40367_rco-MIR319a:mirbase
Length = 211
Score = 60.0 bits (30), Expect = 6e-10
Identities = 62/70 (88%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 98 gtaaatgaatgaatgatgctagagacaaattgaatcttca-cttctctatgcttggactg 156
|||||||| |||||||||| ||||||||||||||||| | |||| || | |||||||||
Sbjct: 135 gtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttc-ctgtacttggactg 193
Query: 157 aagggagctc 166
||||||||||
Sbjct: 194 aagggagctc 203
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 cgactcattcatccaaatac 71
||||||||||||||||||||
Sbjct: 56 cgactcattcatccaaatac 75
>40464_gma-MIR319a:mirbase
Length = 207
Score = 58.0 bits (29), Expect = 2e-09
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 102 atgaatgaatgatgctagagacaaattgaatcttcacttctctatgcttggactgaaggg 161
|||| |||||||||| ||||||||||||||||| | || || | ||||||||||||||
Sbjct: 122 atgagtgaatgatgcgggagacaaattgaatcttaagtttcctgtacttggactgaaggg 181
Query: 162 agctc 166
|||||
Sbjct: 182 agctc 186
>40069_ath-MIR319a:mirbase
Length = 176
Score = 56.0 bits (28), Expect = 9e-09
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 99 taaatgaatgaatgatgctagagacaaattgaatcttcacttctctatgcttggactgaa 158
|||||||||||||||||| |||||||||| ||| | |||||| || ||||||||||
Sbjct: 104 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 163
Query: 159 gggagctc 166
||||||||
Sbjct: 164 gggagctc 171
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 cgactcattcatccaaatacc 72
|||||||||||||||||||||
Sbjct: 55 cgactcattcatccaaatacc 75
>39858_aly-MIR319a:mirbase
Length = 221
Score = 56.0 bits (28), Expect = 9e-09
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 99 taaatgaatgaatgatgctagagacaaattgaatcttcacttctctatgcttggactgaa 158
|||||||||||||||||| |||||||||| ||| | |||||| || ||||||||||
Sbjct: 127 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 186
Query: 159 gggagctc 166
||||||||
Sbjct: 187 gggagctc 194
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 cgactcattcatccaaatacc 72
|||||||||||||||||||||
Sbjct: 78 cgactcattcatccaaatacc 98
>40465_gma-MIR319b:mirbase
Length = 208
Score = 54.0 bits (27), Expect = 3e-08
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 100 aaatgaatgaatgatgctagagacaaattgaatcttcacttctctatgcttggactgaag 159
|||||| |||||||||| |||||||||||| |||| | || || | ||||||||||||
Sbjct: 121 aaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttggactgaag 180
Query: 160 ggagctc 166
|||||||
Sbjct: 181 ggagctc 187
>41405_ptc-MIR319b:mirbase
Length = 185
Score = 52.0 bits (26), Expect = 1e-07
Identities = 61/70 (87%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 98 gtaaatgaatgaatgatgctagagacaaattgaatctt-cacttctctatgcttggactg 156
|||||||||||| |||||| |||||||||| |||||| ||||| |||| ||||||||
Sbjct: 106 gtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttc-ctatcattggactg 164
Query: 157 aagggagctc 166
||||||||||
Sbjct: 165 aagggagctc 174
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 cgactcattcatccaaatac 71
||||||||||||||||||||
Sbjct: 62 cgactcattcatccaaatac 81
>41404_ptc-MIR319a:mirbase
Length = 188
Score = 52.0 bits (26), Expect = 1e-07
Identities = 61/70 (87%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 98 gtaaatgaatgaatgatgctagagacaaattgaatcttca-cttctctatgcttggactg 156
|||||||| |||||||||| ||||||||||||||| | | |||| || | |||||||||
Sbjct: 109 gtaaatgagtgaatgatgcgggagacaaattgaatcctaagcttc-ctgtacttggactg 167
Query: 157 aagggagctc 166
||||||||||
Sbjct: 168 aagggagctc 177
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 cgactcattcatccaaatac 71
||||||||||||||||||||
Sbjct: 62 cgactcattcatccaaatac 81
>40369_rco-MIR319c:mirbase
Length = 188
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 133 cttcacttctctatgcttggactgaagggagctc 166
|||| ||||||| |||||||||||||||||||||
Sbjct: 147 cttctcttctctgtgcttggactgaagggagctc 180
>41407_ptc-MIR319d:mirbase
Length = 193
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 138 cttctctatgcttggactgaagggagctc 166
||||||| |||||||||||||||||||||
Sbjct: 154 cttctctgtgcttggactgaagggagctc 182
>41406_ptc-MIR319c:mirbase
Length = 196
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 138 cttctctatgcttggactgaagggagctc 166
||||||| |||||||||||||||||||||
Sbjct: 157 cttctctgtgcttggactgaagggagctc 185
>42642_tae-MIR319:mirbase
Length = 211
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 atgcttggactgaagggagctc 166
||||||||||||||||||||||
Sbjct: 180 atgcttggactgaagggagctc 201
>41770_bdi-MIR319:mirbase
Length = 280
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 atgcttggactgaagggagctc 166
||||||||||||||||||||||
Sbjct: 222 atgcttggactgaagggagctc 243
>41638_vvi-MIR319f:mirbase
Length = 193
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 146 tgcttggactgaagggagctc 166
|||||||||||||||||||||
Sbjct: 159 tgcttggactgaagggagctc 179
>41410_ptc-MIR319g:mirbase
Length = 204
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 146 tgcttggactgaagggagctc 166
|||||||||||||||||||||
Sbjct: 173 tgcttggactgaagggagctc 193
>41409_ptc-MIR319f:mirbase
Length = 202
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 146 tgcttggactgaagggagctc 166
|||||||||||||||||||||
Sbjct: 171 tgcttggactgaagggagctc 191
>40703_mtr-MIR319:mirbase
Length = 207
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 146 tgcttggactgaagggagctc 166
|||||||||||||||||||||
Sbjct: 166 tgcttggactgaagggagctc 186
>41026_pvu-MIR319c:mirbase
Length = 734
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 147 gcttggactgaagggagctc 166
||||||||||||||||||||
Sbjct: 408 gcttggactgaagggagctc 427
>40466_gma-MIR319c:mirbase
Length = 221
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 139 ttctctatgcttggactgaagggagctc 166
|||||| ||||||||||||| |||||||
Sbjct: 173 ttctctgtgcttggactgaaaggagctc 200
