miRNEST 2.0, an integrative microRNA resource :: BLAST
>39804_aly-MIR159a:mirbase
Length = 222
Score = 248 bits (125), Expect = 1e-66
Identities = 166/181 (91%), Gaps = 2/181 (1%)
Strand = Plus / Plus
Query: 1 gagctcctttaagttcaaacgagagtttagtagggtaaagaaaagctgctaagctatgga 60
||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 23 gagctccttgaagttcaaacgagagttgagcagggtaaagaaaagctgctaagctatgga 82
Query: 61 tcccataagccctaatccttatagagagnnnnnnnnggatttggttatatggcttgcata 120
||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 83 tcccataagccctaatccttataaaga--aaaaaaaggatttggttatatggcttgcata 140
Query: 121 tcttaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagct 180
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 141 tctcaggagctttaacttgccctttaatggcttttactcttctttggattgaagggagct 200
Query: 181 c 181
|
Sbjct: 201 c 201
>40311_bra-MIR159a:mirbase
Length = 185
Score = 228 bits (115), Expect = 1e-60
Identities = 162/179 (90%), Gaps = 5/179 (2%)
Strand = Plus / Plus
Query: 3 gctcctttaagttcaaacgagagtttagtagggtaaagaaaagctgctaagctatggatc 62
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 8 gctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgaatc 67
Query: 63 ccataagccctaatccttatagagagnnnnnnnnggatttggttatatggcttgcatatc 122
||||||||||||||||||||| | | ||||||||||||||||||| ||||||
Sbjct: 68 ccataagccctaatccttatatata-----aaaaggatttggttatatggcttacatatc 122
Query: 123 ttaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctc 181
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tcaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctc 181
>40261_bna-MIR159:mirbase
Length = 183
Score = 228 bits (115), Expect = 1e-60
Identities = 162/179 (90%), Gaps = 5/179 (2%)
Strand = Plus / Plus
Query: 3 gctcctttaagttcaaacgagagtttagtagggtaaagaaaagctgctaagctatggatc 62
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 6 gctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgaatc 65
Query: 63 ccataagccctaatccttatagagagnnnnnnnnggatttggttatatggcttgcatatc 122
||||||||||||||||||||| | | ||||||||||||||||||| ||||||
Sbjct: 66 ccataagccctaatccttatatata-----aaaaggatttggttatatggcttacatatc 120
Query: 123 ttaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctc 181
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctc 179
>40016_ath-MIR159a:mirbase
Length = 184
Score = 210 bits (106), Expect = 3e-55
Identities = 161/181 (88%), Gaps = 3/181 (1%)
Strand = Plus / Plus
Query: 1 gagctcctttaagttcaaacgagagtttagtagggtaaagaaaagctgctaagctatgga 60
||||||||| |||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct: 4 gagctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagctatgga 63
Query: 61 tcccataagccctaatccttatagagagnnnnnnnnggatttggttatatggcttgcata 120
|||||||||||||||||||| || || |||||||||||||||| |||||||
Sbjct: 64 tcccataagccctaatccttgtaaag---taaaaaaggatttggttatatggattgcata 120
Query: 121 tcttaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagct 180
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 121 tctcaggagctttaacttgccctttaatggcttttactcttctttggattgaagggagct 180
Query: 181 c 181
|
Sbjct: 181 c 181
>39805_aly-MIR159b:mirbase
Length = 202
Score = 87.7 bits (44), Expect = 3e-18
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 1 gagctcctttaagttcaaacgagagtttagtagggtaaagaaaagctgctaagctatgga 60
||||||||| |||||||| ||| |||||| ||||||||| |||||||||||||||||||
Sbjct: 17 gagctccttgaagttcaatggagggtttagcagggtaaagtaaagctgctaagctatgga 76
Query: 61 tcccataa 68
||||||||
Sbjct: 77 tcccataa 84
Score = 61.9 bits (31), Expect = 2e-10
Identities = 66/75 (88%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 108 tatggcttgcatatcttaggagctttaacttgccc-tttaattgcttttactcttctttg 166
||||| || ||||||| ||||||||| |||| ||| |||||| |||| |||||||||||
Sbjct: 114 tatggattccatatctcaggagctttcacttacccctttaatggcttc-actcttctttg 172
Query: 167 gattgaagggagctc 181
|||||||||||||||
Sbjct: 173 gattgaagggagctc 187
>40017_ath-MIR159b:mirbase
Length = 196
Score = 85.7 bits (43), Expect = 1e-17
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 1 gagctcctttaagttcaaacgagagtttagtagggtaaagaaaagctgctaagctatgga 60
||||||||| |||||||| ||| |||||| ||||| ||| |||||||||||||||||||
Sbjct: 5 gagctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatgga 64
Query: 61 tcccataagcc 71
|||||||||||
Sbjct: 65 tcccataagcc 75
Score = 60.0 bits (30), Expect = 6e-10
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 117 catatcttaggagctttaacttgccc-tttaattgcttttactcttctttggattgaagg 175
||||||| ||||||||| |||| ||| |||||| |||| ||||||||||||||||||||
Sbjct: 122 catatctcaggagctttcacttacccctttaatggcttc-actcttctttggattgaagg 180
Query: 176 gagctc 181
||||||
Sbjct: 181 gagctc 186
>41024_pvu-MIR159a:mirbase
Length = 174
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 159 cttctttggattgaagggagctc 181
|||||||||||||||||||||||
Sbjct: 149 cttctttggattgaagggagctc 171
>41023_pvu-MIR159a:mirbase
Length = 174
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 159 cttctttggattgaagggagctc 181
|||||||||||||||||||||||
Sbjct: 149 cttctttggattgaagggagctc 171
>40432_gma-MIR159a:mirbase
Length = 214
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 159 cttctttggattgaagggagctc 181
|||||||||||||||||||||||
Sbjct: 171 cttctttggattgaagggagctc 193
>40657_mtr-MIR159a:mirbase
Length = 183
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 ttctttggattgaagggagctc 181
||||||||||||||||||||||
Sbjct: 149 ttctttggattgaagggagctc 170
>40397_ahy-MIR159:mirbase
Length = 197
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 agctgctaagctatggatccca 65
||||||||||||||||||||||
Sbjct: 47 agctgctaagctatggatccca 68
>42695_zma-MIR159f:mirbase
Length = 215
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 192 tctttggattgaagggagctc 212
>42690_zma-MIR159a:mirbase
Length = 246
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 205 tctttggattgaagggagctc 225
>42635_tae-MIR159b:mirbase
Length = 255
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 228 tctttggattgaagggagctc 248
>42494_sbi-MIR159:mirbase
Length = 226
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 202 tctttggattgaagggagctc 222
>42468_ssp-MIR159a:mirbase
Length = 261
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 221 tctttggattgaagggagctc 241
>42455_sof-MIR159d:mirbase
Length = 265
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctc 244
>42453_sof-MIR159b:mirbase
Length = 266
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 225 tctttggattgaagggagctc 245
>42452_sof-MIR159a:mirbase
Length = 265
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctc 244
>41918_osa-MIR159b:mirbase
Length = 188
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 156 tctttggattgaagggagctc 176
>41917_osa-MIR159a:mirbase
Length = 272
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctc 260
>41916_osa-MIR159a:mirbase
Length = 272
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctc 260
>41868_far-MIR159:mirbase
Length = 200
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 167 tctttggattgaagggagctc 187
>41301_ptc-MIR159c:mirbase
Length = 183
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 aagctgctaagctatggatcc 63
|||||||||||||||||||||
Sbjct: 54 aagctgctaagctatggatcc 74
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 111 ggcttgcatatcttaggagcttta 134
||||||||||||| ||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132
>41299_ptc-MIR159a:mirbase
Length = 183
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 aagctgctaagctatggatcc 63
|||||||||||||||||||||
Sbjct: 54 aagctgctaagctatggatcc 74
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 111 ggcttgcatatcttaggagcttta 134
||||||||||||| ||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132
>41300_ptc-MIR159b:mirbase
Length = 187
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 111 ggcttgcatatcttaggagcttta 134
||||||||||||| ||||||||||
Sbjct: 113 ggcttgcatatctcaggagcttta 136
