miRNEST 2.0, an integrative microRNA resource :: BLAST
>41463_ptc-MIR408:mirbase
Length = 105
Score = 79.8 bits (40), Expect = 3e-16
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 63
|||||||||||||||||||||| ||||| |||||||| || |||||||||| || ||
Sbjct: 18 gggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctctaccca 76
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggc 96
>40391_rco-MIR408:mirbase
Length = 92
Score = 75.8 bits (38), Expect = 4e-15
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 2 ctgggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcact 61
|||||||||||||| ||||||||| |||| ||||||||| |||||||||||| ||
Sbjct: 6 ctgggaacaggcagtgcatggatggggctactaacagaaaacatctgttttggctctacc 65
Query: 62 catgcactgcctcttccctggc 83
| ||||||||||||||||||||
Sbjct: 66 cctgcactgcctcttccctggc 87
>41252_csi-MIR408:mirbase
Length = 153
Score = 73.8 bits (37), Expect = 2e-14
Identities = 70/80 (87%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 4 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 63
|||||||||||||||||||||| | | |||||||| |||||||||||||| | | ||
Sbjct: 63 gggaacaggcagagcatggatggaaccattaacaggt--tctctgttttggctcctccca 120
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggc 140
>40405_ahy-MIR408:mirbase
Length = 122
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 ctcatgcactgcctcttccctggc 83
||||||||||||||||||||||||
Sbjct: 78 ctcatgcactgcctcttccctggc 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 ctgggaacaggcagagcatg 21
||||||||||||||||||||
Sbjct: 21 ctgggaacaggcagagcatg 40
>40404_ahy-MIR408:mirbase
Length = 122
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 ctcatgcactgcctcttccctggc 83
||||||||||||||||||||||||
Sbjct: 78 ctcatgcactgcctcttccctggc 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 ctgggaacaggcagagcatg 21
||||||||||||||||||||
Sbjct: 21 ctgggaacaggcagagcatg 40
>40108_ath-MIR408:mirbase
Length = 218
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 44 ctctgttttggcttcactcatgcactgcctcttccctggc 83
|||||||||| || || ||||||||||||||||||||||
Sbjct: 101 ctctgttttgtctctacccatgcactgcctcttccctggc 140
>39897_aly-MIR408:mirbase
Length = 211
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 44 ctctgttttggcttcactcatgcactgcctcttccctggc 83
|||||||||| || || ||||||||||||||||||||||
Sbjct: 98 ctctgttttgtctctacccatgcactgcctcttccctggc 137
>39490_ppt-MIR408b:mirbase
Length = 144
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 ctcatgcactgcctcttccctggc 83
||||||||||||||||||||||||
Sbjct: 90 ctcatgcactgcctcttccctggc 113
>41683_vvi-MIR408:mirbase
Length = 107
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 catgcactgcctcttccctggc 83
||||||||||||||||||||||
Sbjct: 76 catgcactgcctcttccctggc 97
>41193_aqc-MIR408:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 62 catgcactgcctcttccctggc 83
||||||||||||||||||||||
Sbjct: 23 catgcactgcctcttccctggc 2
>39742_smo-MIR408:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 atgcactgcctcttccctggc 83
|||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggc 96
>39428_pta-MIR408:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 atgcactgcctcttccctggc 83
|||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggc 84
>42830_zma-MIR408b:mirbase
Length = 147
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 126 tgcactgcctcttccctggc 145
>42829_zma-MIR408:mirbase
Length = 191
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggc 172
>42647_tae-MIR408:mirbase
Length = 187
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggc 156
>42600_sbi-MIR408:mirbase
Length = 205
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggc 204
>42474_ssp-MIR408d:mirbase
Length = 180
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 159 tgcactgcctcttccctggc 178
>42473_ssp-MIR408a:mirbase
Length = 248
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 227 tgcactgcctcttccctggc 246
>42465_sof-MIR408d:mirbase
Length = 215
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggc 196
>42464_sof-MIR408c:mirbase
Length = 286
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggc 267
>42463_sof-MIR408b:mirbase
Length = 286
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggc 267
>42462_sof-MIR408a:mirbase
Length = 283
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggc 264
>42052_osa-MIR408:mirbase
Length = 213
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggc 173
