miRNEST 2.0, an integrative microRNA resource :: BLAST
>41404_ptc-MIR319a:mirbase
Length = 188
Score = 123 bits (62), Expect = 5e-29
Identities = 146/175 (83%), Gaps = 13/175 (7%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactcattca 72
Query: 61 ttcaaatattgagtccaaaaatttcaaatctcaaatggatt---cactaaacgattgaat 117
| |||||| ||||| || | ||| |||| || |||| || |||||
Sbjct: 73 tccaaatactgagttaaagga----------caaggagattacccagtaaatgagtgaat 122
Query: 118 gatgcgggagacaaattgaatcttaagcttcctgtacttggactgaagggagctc 172
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 123 gatgcgggagacaaattgaatcctaagcttcctgtacttggactgaagggagctc 177
>40367_rco-MIR319a:mirbase
Length = 211
Score = 123 bits (62), Expect = 5e-29
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 7 gagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactcattca 66
Query: 61 ttcaaatattgagt 74
| |||||| |||||
Sbjct: 67 tccaaatactgagt 80
Score = 119 bits (60), Expect = 7e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 113 tgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaagggagctc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaagggagctc 203
>40464_gma-MIR319a:mirbase
Length = 207
Score = 115 bits (58), Expect = 1e-26
Identities = 144/172 (83%), Gaps = 8/172 (4%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
||||||||||||||||||||||||||| | ||| | || |||||||||||||||||||||
Sbjct: 23 gagctttcttcagtccactcatgggtgacagtaagattcaattagctgccgactcattca 82
Query: 61 ttcaaatattgagtccaaaaatttcaaatctcaaatggattcactaaacgattgaatgat 120
| ||||| |||||| || | ||| |||| | ||| | | || ||||||||
Sbjct: 83 tccaaatgttgagtgtaag-----cgaat---aaatatactcagcagatgagtgaatgat 134
Query: 121 gcgggagacaaattgaatcttaagcttcctgtacttggactgaagggagctc 172
|||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 135 gcgggagacaaattgaatcttaagtttcctgtacttggactgaagggagctc 186
>41282_ctr-MIR319:mirbase
Length = 186
Score = 111 bits (56), Expect = 2e-25
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 113 tgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaagggagctc 172
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 115 tgaatgatgcgggagacaaattgaatcttaagcttcctgtgcttggactgaagggagctc 174
>41636_vvi-MIR319c:mirbase
Length = 182
Score = 103 bits (52), Expect = 4e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactcattca 72
Query: 61 ttcaaata 68
| ||||||
Sbjct: 73 tccaaata 80
Score = 103 bits (52), Expect = 4e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 105 taaacgattgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaa 164
|||| |||||||||||||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct: 101 taaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggactgaa 160
Query: 165 gggagctc 172
||||||||
Sbjct: 161 gggagctc 168
>40704_mtr-MIR319b:mirbase
Length = 180
Score = 103 bits (52), Expect = 4e-23
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 113 tgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaagggagctc 172
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 114 tgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaagggagctc 173
>40465_gma-MIR319b:mirbase
Length = 208
Score = 103 bits (52), Expect = 4e-23
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 113 tgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaagggagctc 172
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 128 tgaatgatgcgggagacaaattgattcttaagtttcctgtacttggactgaagggagctc 187
>41544_sly-MIR319:mirbase
Length = 168
Score = 73.8 bits (37), Expect = 4e-14
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 113 tgaatgatgcgggag-acaaattgaatcttaagcttcctgtacttggactgaagggagct 171
||||||| ||||||| |||| |||| |||| |||||||||||||||||||||||||||||
Sbjct: 107 tgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttggactgaagggagct 166
Query: 172 c 172
|
Sbjct: 167 c 167
Score = 56.0 bits (28), Expect = 9e-09
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 6 ttcttcagtccactcatgggtggcggtagggtttaattagctgccgactcattcattcaa 65
||||| ||||||| |||||| || ||||||| |||| ||||||||||||||||| |||
Sbjct: 5 ttctttagtccacacatggggaacgatagggttcaatttgctgccgactcattcatccaa 64
Query: 66 atattgag 73
|| |||||
Sbjct: 65 atgttgag 72
>41405_ptc-MIR319b:mirbase
Length = 185
Score = 71.9 bits (36), Expect = 2e-13
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 117 tgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaagggagctc 172
|||||||||||||||||| |||||||| |||||| | ||||||||||||||||||
Sbjct: 119 tgatgcgggagacaaattaaatcttaaacttcctatcattggactgaagggagctc 174
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 37 tttaattagctgccgactcattcattcaaatattgagt 74
||||||||| | ||||||||||||| |||||| |||||
Sbjct: 49 tttaattagttaccgactcattcatccaaatactgagt 86
>41185_aqc-MIR319:mirbase
Length = 177
Score = 71.9 bits (36), Expect = 2e-13
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 113 tgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaagggagctc 172
|||||||| ||||||| ||||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 113 tgaatgatccgggagattaattggatcttatgcttcttgtacttggactgaagggagctc 172
Score = 42.1 bits (21), Expect = 1e-04
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
||||| |||||||||||||||| ||| | || | || |||| ||||||||||||||||
Sbjct: 4 gagctctcttcagtccactcataggtagtagtcagattcaatttgctgccgactcattca 63
Query: 61 t 61
|
Sbjct: 64 t 64
>41406_ptc-MIR319c:mirbase
Length = 196
Score = 69.9 bits (35), Expect = 6e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggttta-attagctgccgactcattc 59
|||||||||||||||||||||||| || | ||||||| |||||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 72
Query: 60 attcaaa 66
|||||||
Sbjct: 73 attcaaa 79
Score = 42.1 bits (21), Expect = 1e-04
Identities = 52/61 (85%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 113 tgaatgatgcgggagacaaattgaatcttaagcttc-ctgtacttggactgaagggagct 171
|||||||||||||||| ||||| ||| | |||| |||| ||||||||||||||||||
Sbjct: 125 tgaatgatgcgggagataaatttcatccttttcttctctgtgcttggactgaagggagct 184
Query: 172 c 172
|
Sbjct: 185 c 185
>41995_osa-MIR319b:mirbase
Length = 197
Score = 65.9 bits (33), Expect = 9e-12
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 8 cttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
|||||||||||||||||| || | |||||| |||||||||||||||||||||
Sbjct: 21 cttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 73
>41407_ptc-MIR319d:mirbase
Length = 193
Score = 61.9 bits (31), Expect = 1e-10
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggttta-attagctgccgactcattc 59
|||||| ||||||||||||||||| || | ||||||| |||||||||||||||||||
Sbjct: 13 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 72
Query: 60 attcaaa 66
|||||||
Sbjct: 73 attcaaa 79
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 149 ctgtacttggactgaagggagctc 172
|||| |||||||||||||||||||
Sbjct: 159 ctgtgcttggactgaagggagctc 182
>40369_rco-MIR319c:mirbase
Length = 188
Score = 61.9 bits (31), Expect = 1e-10
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggttt-aattagctgccgactcattc 59
||||| ||||||||||||||||||| || | ||| ||| ||||| ||||||||||||||
Sbjct: 7 gagctctcttcagtccactcatgggcgggcgaaggttttgaattatctgccgactcattc 66
Query: 60 attcaaa 66
|||||||
Sbjct: 67 attcaaa 73
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 149 ctgtacttggactgaagggagctc 172
|||| |||||||||||||||||||
Sbjct: 157 ctgtgcttggactgaagggagctc 180
>42781_zma-MIR319b:mirbase
Length = 213
Score = 58.0 bits (29), Expect = 2e-09
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 8 cttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
|||||||||||||| ||| || | |||||| |||||||||||||||||||||
Sbjct: 31 cttcagtccactcaggggcggtgctagggtcgaattagctgccgactcattca 83
>42563_sbi-MIR319:mirbase
Length = 249
Score = 58.0 bits (29), Expect = 2e-09
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 8 cttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
|||||||||||||| ||| || | |||||| |||||||||||||||||||||
Sbjct: 43 cttcagtccactcaggggcggtgctagggtcgaattagctgccgactcattca 95
>41638_vvi-MIR319f:mirbase
Length = 193
Score = 58.0 bits (29), Expect = 2e-09
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggttta--attagctgccgactcatt 58
|||||| ||||||||||||||||| ||| | ||||| || ||||||||||||||||||
Sbjct: 13 gagcttccttcagtccactcatggatgg-gttaggggtttggattagctgccgactcatt 71
Query: 59 cattcaaa 66
||||||||
Sbjct: 72 cattcaaa 79
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 149 ctgtacttggactgaagggagctc 172
|||| |||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctc 179
>42782_zma-MIR319c:mirbase
Length = 216
Score = 56.0 bits (28), Expect = 9e-09
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
||||| |||||||||||||| |||| ||||||||| ||||||||||||||||| ||
Sbjct: 23 gagctctcttcagtccactctaaaatggctgtagggtttcattagctgccgactcatcca 82
Query: 61 ttca 64
||||
Sbjct: 83 ttca 86
>42780_zma-MIR319a:mirbase
Length = 209
Score = 56.0 bits (28), Expect = 9e-09
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
||||| |||||||||||||| |||| ||||||||| ||||||||||||||||| ||
Sbjct: 23 gagctctcttcagtccactctgaaatggctgtagggtttcattagctgccgactcatcca 82
Query: 61 ttca 64
||||
Sbjct: 83 ttca 86
>41994_osa-MIR319a:mirbase
Length = 191
Score = 56.0 bits (28), Expect = 9e-09
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
||||| |||||||||||||| | |||| ||||||||| |||||||||||| |||| ||
Sbjct: 13 gagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatcatcca 72
Query: 61 ttca 64
||||
Sbjct: 73 ttca 76
>41409_ptc-MIR319f:mirbase
Length = 202
Score = 56.0 bits (28), Expect = 9e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 34 gggtttaattagctgccgactcattcattcaa 65
||||| ||||||||||||||||||||||||||
Sbjct: 49 gggttgaattagctgccgactcattcattcaa 80
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 149 ctgtacttggactgaagggagctc 172
|||| |||||||||||||||||||
Sbjct: 168 ctgtgcttggactgaagggagctc 191
>42783_zma-MIR319d:mirbase
Length = 212
Score = 50.1 bits (25), Expect = 6e-07
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 8 cttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
|||||||||||||| ||| || | |||||| ||||||||||||||||||||
Sbjct: 30 cttcagtccactcaggggcggtgctagggtcggattagctgccgactcattca 82
>40070_ath-MIR319b:mirbase
Length = 172
Score = 50.1 bits (25), Expect = 6e-07
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 113 tgaatgatgcgggagacaaattgaatcttaagcttc-ctgtacttggactgaagggagct 171
||||||||||| |||||||||||| |||| | |||| || | ||||||||||||||||||
Sbjct: 110 tgaatgatgcgagagacaaattgagtcttca-cttctctatgcttggactgaagggagct 168
Query: 172 c 172
|
Sbjct: 169 c 169
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgg 24
||||||||||| ||||||||||||
Sbjct: 4 gagctttcttcggtccactcatgg 27
>39859_aly-MIR319b:mirbase
Length = 246
Score = 50.1 bits (25), Expect = 6e-07
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 113 tgaatgatgcgggagacaaattgaatcttaagcttc-ctgtacttggactgaagggagct 171
||||||||||| |||||||||||| |||| | |||| || | ||||||||||||||||||
Sbjct: 149 tgaatgatgcgagagacaaattgagtcttca-cttctctatgcttggactgaagggagct 207
Query: 172 c 172
|
Sbjct: 208 c 208
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgg 24
||||||||||| ||||||||||||
Sbjct: 43 gagctttcttcggtccactcatgg 66
>42564_sbi-MIR319b:mirbase
Length = 179
Score = 48.1 bits (24), Expect = 2e-06
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
||||| |||||||||||||| |||| |||| |||| ||||||||||||||||| ||
Sbjct: 3 gagctctcttcagtccactctaaaatggctgtagagtttcattagctgccgactcatcca 62
Query: 61 ttca 64
||||
Sbjct: 63 ttca 66
>41771_bdi-MIR319b:mirbase
Length = 190
Score = 48.1 bits (24), Expect = 2e-06
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgggtggcggtagggtttaattagctgccgactcattca 60
||||| |||||||||||||| | || | ||||||||| |||||||||||| |||| ||
Sbjct: 11 gagctctcttcagtccactctcagatgactgtagggttttattagctgccgattcatcca 70
Query: 61 ttca 64
||||
Sbjct: 71 ttca 74
>41410_ptc-MIR319g:mirbase
Length = 204
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 34 gggtttaattagctgccgactcattcattcaa 65
||||| || |||||||||||||||||||||||
Sbjct: 49 gggttgaactagctgccgactcattcattcaa 80
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 149 ctgtacttggactgaagggagctc 172
|||| |||||||||||||||||||
Sbjct: 170 ctgtgcttggactgaagggagctc 193
>40069_ath-MIR319a:mirbase
Length = 176
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 40 aattagctgccgactcattcattcaaata 68
|||||||| ||||||||||||| ||||||
Sbjct: 45 aattagcttccgactcattcatccaaata 73
>39858_aly-MIR319a:mirbase
Length = 221
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 40 aattagctgccgactcattcattcaaata 68
|||||||| ||||||||||||| ||||||
Sbjct: 68 aattagcttccgactcattcatccaaata 96
>40703_mtr-MIR319:mirbase
Length = 207
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccactcatgg 24
|||||| |||||||||||||||||
Sbjct: 22 gagcttccttcagtccactcatgg 45
