miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41245_csi-MIR398:mirbase
Length = 225
Score = 264 bits (133), Expect = 1e-71
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 1 gaggagtgatcctgagaacagagggtggcgttggcttaaatttgatttgcattgctgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 gaggagtgatcctgagaacagagggtggcgttggcttaaatttgatttgcattgctgctg 79
Query: 61 cctgctcctgccatacattaaatcaaaaagattgtatgtggccaacgcaccttgtgttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 cctgctcctgccatacattaaatcaaaaagattgtatgtggccaacgcaccttgtgttct 139
Query: 121 caggtcacccctt 133
|||||||||||||
Sbjct: 140 caggtcacccctt 152
>40403_ahy-MIR398:mirbase
Length = 153
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 109 accttgtgttctcaggtcacccctt 133
|||||||||||||||||||||||||
Sbjct: 125 accttgtgttctcaggtcacccctt 149
>41078_gra-MIR398:mirbase
Length = 123
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 111 cttgtgttctcaggtcacccctt 133
|||||||||||||||||||||||
Sbjct: 64 cttgtgttctcaggtcacccctt 86
>41059_ghr-MIR398:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 111 cttgtgttctcaggtcacccctt 133
|||||||||||||||||||||||
Sbjct: 64 cttgtgttctcaggtcacccctt 86
>41800_bdi-MIR398b:mirbase
Length = 163
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 ttgtgttctcaggtcacccctt 133
||||||||||||||||||||||
Sbjct: 100 ttgtgttctcaggtcacccctt 121
>41665_vvi-MIR398a:mirbase
Length = 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 ttgtgttctcaggtcacccctt 133
||||||||||||||||||||||
Sbjct: 72 ttgtgttctcaggtcacccctt 93
>41190_aqc-MIR398a:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 ttgtgttctcaggtcacccctt 133
||||||||||||||||||||||
Sbjct: 65 ttgtgttctcaggtcacccctt 86
>41145_tcc-MIR398b:mirbase
Length = 165
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 ttgtgttctcaggtcacccctt 133
||||||||||||||||||||||
Sbjct: 124 ttgtgttctcaggtcacccctt 145
>40728_mtr-MIR398a:mirbase
Length = 98
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 ttgtgttctcaggtcacccctt 133
||||||||||||||||||||||
Sbjct: 72 ttgtgttctcaggtcacccctt 93
>40479_gma-MIR398b:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 ttgtgttctcaggtcacccctt 133
||||||||||||||||||||||
Sbjct: 95 ttgtgttctcaggtcacccctt 116
>40478_gma-MIR398a:mirbase
Length = 116
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 ttgtgttctcaggtcacccctt 133
||||||||||||||||||||||
Sbjct: 76 ttgtgttctcaggtcacccctt 97
>40308_bol-MIR398a:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 ttgtgttctcaggtcacccctt 133
||||||||||||||||||||||
Sbjct: 70 ttgtgttctcaggtcacccctt 91
>40089_ath-MIR398a:mirbase
Length = 105
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 ttgtgttctcaggtcacccctt 133
||||||||||||||||||||||
Sbjct: 74 ttgtgttctcaggtcacccctt 95
>39881_aly-MIR398a:mirbase
Length = 182
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 ttgtgttctcaggtcacccctt 133
||||||||||||||||||||||
Sbjct: 121 ttgtgttctcaggtcacccctt 142
>42039_osa-MIR398a:mirbase
Length = 115
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 tgtgttctcaggtcacccctt 133
|||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccctt 105
>41445_ptc-MIR398a:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 tgtgttctcaggtcacccctt 133
|||||||||||||||||||||
Sbjct: 80 tgtgttctcaggtcacccctt 100
>40381_rco-MIR398a:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 tgtgttctcaggtcacccctt 133
|||||||||||||||||||||
Sbjct: 66 tgtgttctcaggtcacccctt 86
>40091_ath-MIR398c:mirbase
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 113 tgtgttctcaggtcacccct 132
||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccct 104
>40090_ath-MIR398b:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 113 tgtgttctcaggtcacccct 132
||||||||||||||||||||
Sbjct: 86 tgtgttctcaggtcacccct 105
>39882_aly-MIR398b:mirbase
Length = 142
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 113 tgtgttctcaggtcacccct 132
||||||||||||||||||||
Sbjct: 91 tgtgttctcaggtcacccct 110
