miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41220_csi-MIR162:mirbase
Length = 201
Score = 184 bits (93), Expect = 7e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatcactttgtgcaaattttgttgtgaaaaataacacaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 ctggaggcagcggttcatcgatcactttgtgcaaattttgttgtgaaaaataacacaaaa 148
Query: 61 tacatgaatcgatcgataaacctctgcatccag 93
|||||||||||||||||||||||||||||||||
Sbjct: 149 tacatgaatcgatcgataaacctctgcatccag 181
>41046_ghr-MIR162a:mirbase
Length = 148
Score = 105 bits (53), Expect = 5e-24
Identities = 85/93 (91%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatcactttgtgcaaattttgttgtgaaaaataacacaaaa 60
||||||||||||||||||||||| ||| || ||||||||||||| || |||||||||
Sbjct: 24 ctggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaa-taacacaaa- 81
Query: 61 tacatgaatcgatcgataaacctctgcatccag 93
|||||||||||||||||||||||||||||||||
Sbjct: 82 tacatgaatcgatcgataaacctctgcatccag 114
>41090_tcc-MIR162:mirbase
Length = 131
Score = 97.6 bits (49), Expect = 1e-21
Identities = 84/93 (90%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatcactttgtgcaaattttgttgtgaaaaataacacaaaa 60
||||||||||||||||||||||| ||| || ||||||||||||| || |||||||||
Sbjct: 21 ctggaggcagcggttcatcgatctcttcctgggaattttgttgtgagaa-taacacaaa- 78
Query: 61 tacatgaatcgatcgataaacctctgcatccag 93
||||||| |||||||||||||||||||||||||
Sbjct: 79 tacatgattcgatcgataaacctctgcatccag 111
>40342_rco-MIR162:mirbase
Length = 101
Score = 83.8 bits (42), Expect = 2e-17
Identities = 83/94 (88%), Gaps = 2/94 (2%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatcactttgtgcaa-attttgttgtgaaaaataacacaaa 59
||||||||||||||||||||||| ||| || || |||||||||||||| | || | |||
Sbjct: 4 ctggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaa-ataaa 62
Query: 60 atacatgaatcgatcgataaacctctgcatccag 93
| |||||||||||||||||||||||||||||||
Sbjct: 63 acgcatgaatcgatcgataaacctctgcatccag 96
>40329_cpa-MIR162a:mirbase
Length = 109
Score = 71.9 bits (36), Expect = 8e-14
Identities = 80/93 (86%), Gaps = 5/93 (5%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatcactttgtgcaaattttgttgtgaaaaataacacaaaa 60
||||||||||||||||||||||| ||| || ||||| || ||||||||| ||| ||
Sbjct: 13 ctggaggcagcggttcatcgatctcttcctgggaatttggt-gtgaaaaatcacagaa-- 69
Query: 61 tacatgaatcgatcgataaacctctgcatccag 93
|||||||||||||||||||||||||||||||
Sbjct: 70 --catgaatcgatcgataaacctctgcatccag 100
>40437_gma-MIR162:mirbase
Length = 102
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 63 catgaatcgatcgataaacctctgcatccag 93
|||||||||||||||||||||||||||||||
Sbjct: 63 catgaatcgatcgataaacctctgcatccag 93
>39813_aly-MIR162b:mirbase
Length = 184
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 63 catgaatcgatcgataaacctctgcatccag 93
|||||||||||||||||||||||||||||||
Sbjct: 103 catgaatcgatcgataaacctctgcatccag 133
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatca 24
||||||||||||||||||||||||
Sbjct: 50 ctggaggcagcggttcatcgatca 73
>42502_sbi-MIR162:mirbase
Length = 127
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
||||||||||||||||||||||||||||
Sbjct: 100 gaatcgatcgataaacctctgcatccag 127
>41929_osa-MIR162a:mirbase
Length = 171
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
||||||||||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>41313_ptc-MIR162a:mirbase
Length = 107
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 62 acatgaatcgatcgataaacctctgcatccag 93
||||||| ||||||||||||||||||||||||
Sbjct: 67 acatgaaccgatcgataaacctctgcatccag 98
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatc 23
|||||||||||||||||||||||
Sbjct: 11 ctggaggcagcggttcatcgatc 33
>40663_mtr-MIR162:mirbase
Length = 124
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 62 acatgaatcgatcgataaacctctgcatccag 93
|||||||||| |||||||||||||||||||||
Sbjct: 76 acatgaatcggtcgataaacctctgcatccag 107
>40025_ath-MIR162b:mirbase
Length = 111
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
||||||||||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatccag 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatca 24
||||||||||||||||||||||||
Sbjct: 12 ctggaggcagcggttcatcgatca 35
>40024_ath-MIR162a:mirbase
Length = 140
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 63 catgaatcgatcgataaacctctgcatccag 93
||||||| |||||||||||||||||||||||
Sbjct: 79 catgaatagatcgataaacctctgcatccag 109
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatc 23
|||||||||||||||||||||||
Sbjct: 25 ctggaggcagcggttcatcgatc 47
>39812_aly-MIR162a:mirbase
Length = 228
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 63 catgaatcgatcgataaacctctgcatccag 93
||||||| |||||||||||||||||||||||
Sbjct: 126 catgaatagatcgataaacctctgcatccag 156
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatc 23
|||||||||||||||||||||||
Sbjct: 68 ctggaggcagcggttcatcgatc 90
>41736_bdi-MIR162:mirbase
Length = 133
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatcc 91
||||||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatcc 129
>42708_zma-MIR162:mirbase
Length = 130
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
|||||| |||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130
>41930_osa-MIR162b:mirbase
Length = 134
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
|||||||||||||| |||||||||||||
Sbjct: 97 gaatcgatcgataagcctctgcatccag 124
>41578_vvi-MIR162:mirbase
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
|||||| |||||||||||||||||||||
Sbjct: 66 gaatcggtcgataaacctctgcatccag 93
>41530_sly-MIR162:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
|||||| |||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99
>41315_ptc-MIR162c:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 cgatcgataaacctctgcatccag 93
||||||||||||||||||||||||
Sbjct: 75 cgatcgataaacctctgcatccag 98
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatc 23
|||||||||||||||||||||||
Sbjct: 11 ctggaggcagcggttcatcgatc 33
>41314_ptc-MIR162b:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 cgatcgataaacctctgcatccag 93
||||||||||||||||||||||||
Sbjct: 75 cgatcgataaacctctgcatccag 98
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatc 23
|||||||||||||||||||||||
Sbjct: 11 ctggaggcagcggttcatcgatc 33
