miRNEST 2.0, an integrative microRNA resource :: BLAST
>40025_ath-MIR162b:mirbase
Length = 111
Score = 220 bits (111), Expect = 2e-58
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 3 gagcaagcagcgctggatgcagaggtttatcgatcgattcttgcttttgtaaacaaaaat 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gagcaagcagcgctggatgcagaggtttatcgatcgattcttgcttttgtaaacaaaaat 52
Query: 63 aaatattcacaggaattgatcgatgaaccgctgcctccagcgacttcactc 113
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 aaatattcacaggaattgatcgatgaaccgctgcctccagcgacttcactc 1
>39813_aly-MIR162b:mirbase
Length = 184
Score = 157 bits (79), Expect = 2e-39
Identities = 98/104 (94%), Gaps = 4/104 (3%)
Strand = Plus / Minus
Query: 11 agcgctggatgcagaggtttatcgatcgattcttgcttttgtaaacaaaaataaatattc 70
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct: 137 agcgctggatgcagaggtttatcgatcgattcatgcttttgaaaacaaaaata----ttc 82
Query: 71 acaggaattgatcgatgaaccgctgcctccagcgacttcactct 114
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 acaggaattgatcgatgaaccgctgcctccagcgacttcactct 38
>40024_ath-MIR162a:mirbase
Length = 140
Score = 65.9 bits (33), Expect = 6e-12
Identities = 46/49 (93%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 68 ttcacaggaattgatcgatgaaccgctgcctccagcgact-tcactctt 115
|||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 59 ttcacaggaagagatcgatgaaccgctgcctccagcgactctcactctt 11
>41220_csi-MIR162:mirbase
Length = 201
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 79 tgatcgatgaaccgctgcctccagcgacttcactct 114
|||||||||||||||||||||||| |||||||||||
Sbjct: 112 tgatcgatgaaccgctgcctccagtgacttcactct 77
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 11 agcgctggatgcagaggtttatcgatcgattc 42
||||||||||||||||||||||||||||||||
Sbjct: 185 agcgctggatgcagaggtttatcgatcgattc 154
>40437_gma-MIR162:mirbase
Length = 102
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 11 agcgctggatgcagaggtttatcgatcgattc 42
||||||||||||||||||||||||||||||||
Sbjct: 97 agcgctggatgcagaggtttatcgatcgattc 66
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 80 gatcgatgaaccgctgcctccagcgacttcac 111
||||||||||||||||| ||||| ||||||||
Sbjct: 32 gatcgatgaaccgctgcatccagtgacttcac 1
>40342_rco-MIR162:mirbase
Length = 101
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 11 agcgctggatgcagaggtttatcgatcgattc 42
||||||||||||||||||||||||||||||||
Sbjct: 100 agcgctggatgcagaggtttatcgatcgattc 69
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 80 gatcgatgaaccgctgcctccag 102
|||||||||||||||||||||||
Sbjct: 26 gatcgatgaaccgctgcctccag 4
>41046_ghr-MIR162a:mirbase
Length = 148
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 12 gcgctggatgcagaggtttatcgatcgattc 42
|||||||||||||||||||||||||||||||
Sbjct: 117 gcgctggatgcagaggtttatcgatcgattc 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 67 attcacaggaattgatcgatgaaccgctgcctccag 102
|||| |||||| |||||||||||||||||||||||
Sbjct: 59 attctcaggaagagatcgatgaaccgctgcctccag 24
>39812_aly-MIR162a:mirbase
Length = 228
Score = 61.9 bits (31), Expect = 9e-11
Identities = 90/106 (84%), Gaps = 4/106 (3%)
Strand = Plus / Minus
Query: 13 cgctggatgcagaggtttatcgatcgattcttgcttttgtaaacaaaaataaat--attc 70
||||||||||||||||||||||||| |||| ||||||| | || | ||| || |||
Sbjct: 158 cgctggatgcagaggtttatcgatctattcatgctttt-tcaatatttatatattcgttc 100
Query: 71 acaggaattgatcgatgaaccgctgcctccagcgact-tcactctt 115
|||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 99 ccaggaagagatcgatgaaccgctgcctccagcgactctcactctt 54
>40329_cpa-MIR162a:mirbase
Length = 109
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 13 cgctggatgcagaggtttatcgatcgattc 42
||||||||||||||||||||||||||||||
Sbjct: 102 cgctggatgcagaggtttatcgatcgattc 73
Score = 52.0 bits (26), Expect = 9e-08
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 67 attcacaggaattgatcgatgaaccgctgcctccagcgactt 108
|||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 48 attcccaggaagagatcgatgaaccgctgcctccagtgactt 7
>41578_vvi-MIR162:mirbase
Length = 103
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 13 cgctggatgcagaggtttatcgatcgattcttg 45
||||||||||||||||||||||| |||||||||
Sbjct: 95 cgctggatgcagaggtttatcgaccgattcttg 63
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 80 gatcgatgaaccgctgcctccagcgacttca 110
||||||||||||||||| ||||| |||||||
Sbjct: 31 gatcgatgaaccgctgcatccagtgacttca 1
>42502_sbi-MIR162:mirbase
Length = 127
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 15 ctggatgcagaggtttatcgatcgattc 42
||||||||||||||||||||||||||||
Sbjct: 127 ctggatgcagaggtttatcgatcgattc 100
>41929_osa-MIR162a:mirbase
Length = 171
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 15 ctggatgcagaggtttatcgatcgattc 42
||||||||||||||||||||||||||||
Sbjct: 163 ctggatgcagaggtttatcgatcgattc 136
>41313_ptc-MIR162a:mirbase
Length = 107
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 11 agcgctggatgcagaggtttatcgatcg 38
||||||||||||||||||||||||||||
Sbjct: 102 agcgctggatgcagaggtttatcgatcg 75
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 80 gatcgatgaaccgctgcctccag 102
|||||||||||||||||||||||
Sbjct: 33 gatcgatgaaccgctgcctccag 11
>40663_mtr-MIR162:mirbase
Length = 124
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 11 agcgctggatgcagaggtttatcgatcgattc 42
||||||||||||||||||||||||| ||||||
Sbjct: 111 agcgctggatgcagaggtttatcgaccgattc 80
>41736_bdi-MIR162:mirbase
Length = 133
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 17 ggatgcagaggtttatcgatcgattc 42
||||||||||||||||||||||||||
Sbjct: 129 ggatgcagaggtttatcgatcgattc 104
>41090_tcc-MIR162:mirbase
Length = 131
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 15 ctggatgcagaggtttatcgatcga 39
|||||||||||||||||||||||||
Sbjct: 111 ctggatgcagaggtttatcgatcga 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 67 attcacaggaattgatcgatgaaccgctgcctccag 102
|||| |||||| |||||||||||||||||||||||
Sbjct: 56 attcccaggaagagatcgatgaaccgctgcctccag 21
>42708_zma-MIR162:mirbase
Length = 130
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 15 ctggatgcagaggtttatcgatcgattc 42
||||||||||||||||||||| ||||||
Sbjct: 130 ctggatgcagaggtttatcgaccgattc 103
>41930_osa-MIR162b:mirbase
Length = 134
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 15 ctggatgcagaggtttatcgatcgattc 42
||||||||||||| ||||||||||||||
Sbjct: 124 ctggatgcagaggcttatcgatcgattc 97
>41530_sly-MIR162:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 15 ctggatgcagaggtttatcgatcgattc 42
||||||||||||||||||||| ||||||
Sbjct: 99 ctggatgcagaggtttatcgaccgattc 72
>41315_ptc-MIR162c:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 ctggatgcagaggtttatcgatcg 38
||||||||||||||||||||||||
Sbjct: 98 ctggatgcagaggtttatcgatcg 75
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 80 gatcgatgaaccgctgcctccag 102
|||||||||||||||||||||||
Sbjct: 33 gatcgatgaaccgctgcctccag 11
>41314_ptc-MIR162b:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 ctggatgcagaggtttatcgatcg 38
||||||||||||||||||||||||
Sbjct: 98 ctggatgcagaggtttatcgatcg 75
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 80 gatcgatgaaccgctgcctccag 102
|||||||||||||||||||||||
Sbjct: 33 gatcgatgaaccgctgcctccag 11
