miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40259_bna-MIR156b:mirbase
Length = 208
Score = 317 bits (160), Expect = 2e-87
Identities = 192/208 (92%)
Strand = Plus / Plus
Query: 1 taggtttgagagtgatgctggttgttgacagaagatagagagcactaaggatgacatgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taggtttgagagtgatgctggttgttgacagaagatagagagcactaaggatgacatgca 60
Query: 61 agtacatatgtatgtatcatcacaccgcctgtggatgattacaaaaataaaaccaattca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agtacatatgtatgtatcatcacaccgcctgtggatgattacaaaaataaaaccaattca 120
Query: 121 aannnnnnnnnnnnnnnncctgcatgtctactctttcgtgctctctatacttctgtcacc 180
|| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaagagagagagagagagcctgcatgtctactctttcgtgctctctatacttctgtcacc 180
Query: 181 accattatttcttcttctttcttaccta 208
||||||||||||||||||||||||||||
Sbjct: 181 accattatttcttcttctttcttaccta 208
>40310_bra-MIR157a:mirbase
Length = 149
Score = 194 bits (98), Expect = 2e-50
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 12 gtgatgctggttgttgacagaagatagagagcactaaggatgacatgcaagtacatatgt 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgatgctggttgttgacagaagatagagagcactaaggatgacatgcaagtacatatgt 60
Query: 72 atgtatcatcacaccgcctgtggatgattacaaaaata 109
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgtatcatcacaccgcctgtggatgattacaaaaata 98
Score = 99.6 bits (50), Expect = 8e-22
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 139 cctgcatgtctactctttcgtgctctctatacttctgtcaccaccattat 188
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 cctgcatgtctactctttcgtgctctctatacttctgtcaccaccattat 149
>40012_ath-MIR157c:mirbase
Length = 217
Score = 155 bits (78), Expect = 2e-38
Identities = 93/98 (94%)
Strand = Plus / Plus
Query: 2 aggtttgagagtgatgctggttgttgacagaagatagagagcactaaggatgacatgcaa 61
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggtttgagagtgatgttggttgttgacagaagatagagagcactaaggatgacatgcaa 60
Query: 62 gtacatatgtatgtatcatcacaccgcctgtggatgat 99
||||||| ||| |||||||||||||| ||||||||||
Sbjct: 61 gtacatacatatatatcatcacaccgcatgtggatgat 98
Score = 89.7 bits (45), Expect = 8e-19
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 139 cctgcatgtctactctttcgtgctctctatacttctgtcaccaccattatttcttcttct 198
||||||| |||||||||| |||||||||||||||||||||||||| |||| |||||||||
Sbjct: 149 cctgcatctctactcttttgtgctctctatacttctgtcaccacctttatctcttcttct 208
Query: 199 ttcttacct 207
||| ||||
Sbjct: 209 ctctaacct 217
>39800_aly-MIR157c:mirbase
Length = 293
Score = 129 bits (65), Expect = 9e-31
Identities = 89/96 (92%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 4 gtttgagagtgatgctggttgttgacagaagatagagagcactaaggatgacatgcaagt 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 gtttgagagtgatgctggttgttgacagaagatagagagcactaaggatgacatgcaagc 93
Query: 64 acatatgtatgtatcatcacaccgcctgtggatgat 99
||||| || |||||||||||| | ||||||||||
Sbjct: 94 acata--catatatcatcacaccccatgtggatgat 127
Score = 97.6 bits (49), Expect = 3e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 140 ctgcatgtctactctttcgtgctctctatacttctgtcaccaccattatttcttcttctt 199
|||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ctgcatctctactcttttgtgctctctatacttctgtcaccacctttatttcttcttctc 260
Query: 200 tcttaccta 208
||| |||||
Sbjct: 261 tctcaccta 269
>40260_bna-MIR156c:mirbase
Length = 155
Score = 105 bits (53), Expect = 1e-23
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 10 gagtgatgctggttgttgacagaagatagagagcactaaggatgacatgcaagtaca 66
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gagtgatgcaggttgttgacagaagatagagagcactaaggatgacatgcaagtaca 59
Score = 63.9 bits (32), Expect = 5e-11
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 139 cctgcatgtctactctttcgtgctctctatacttctgtcaccaccattattt 190
||||||| | |||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 98 cctgcatctttactcttttgtgctctctatacttctgtcaataccattattt 149
>40304_bol-MIR157a:mirbase
Length = 106
Score = 93.7 bits (47), Expect = 5e-20
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 20 ggttgttgacagaagatagagagcactaaggatgacatgcaagtaca 66
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggttgttgacagaagatagagagcactaaggatgacatgcaagtaca 47
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 149 tactctttcgtgctctctatacttctgtca 178
|||||||| |||||||||||||||||||||
Sbjct: 72 tactcttttgtgctctctatacttctgtca 101
>39801_aly-MIR157d:mirbase
Length = 256
Score = 69.9 bits (35), Expect = 7e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 19 tggttgttgacagaagatagagagcactaaggatgacatgcaa 61
|||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 31 tggttgctgacagaagatagagagcactaaggatgatatgcaa 73
>40654_mtr-MIR156g:mirbase
Length = 120
Score = 65.9 bits (33), Expect = 1e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 20 ggttgttgacagaagatagagagcactaaggatgacatgca 60
||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 1 ggttgttgacagaagatagagggcactaaggatgatatgca 41
>40013_ath-MIR157d:mirbase
Length = 221
Score = 61.9 bits (31), Expect = 2e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 19 tggttgttgacagaagatagagagcactaaggatg 53
|||||| ||||||||||||||||||||||||||||
Sbjct: 17 tggttgctgacagaagatagagagcactaaggatg 51
>40395_ahy-MIR156b:mirbase
Length = 135
Score = 56.0 bits (28), Expect = 1e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 21 gttgttgacagaagatagagagcactaaggatgacatgca 60
||||||||||||||||||||||||| || ||||| |||||
Sbjct: 19 gttgttgacagaagatagagagcacaaaagatgatatgca 58
>40394_ahy-MIR156b:mirbase
Length = 135
Score = 56.0 bits (28), Expect = 1e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 21 gttgttgacagaagatagagagcactaaggatgacatgca 60
||||||||||||||||||||||||| || ||||| |||||
Sbjct: 19 gttgttgacagaagatagagagcacaaaagatgatatgca 58
>40336_rco-MIR156g:mirbase
Length = 97
Score = 56.0 bits (28), Expect = 1e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 21 gttgttgacagaagatagagagcactaaggatgacatgca 60
|||||||||||||||||||||||||| | ||||| |||||
Sbjct: 2 gttgttgacagaagatagagagcactgacgatgaaatgca 41
>41525_sly-MIR156a:mirbase
Length = 100
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 25 ttgacagaagatagagagcactaaggatgacatgc 59
|||||||||||||||||||||||| ||||| ||||
Sbjct: 1 ttgacagaagatagagagcactaatgatgatatgc 35
>41569_vvi-MIR156i:mirbase
Length = 103
Score = 52.0 bits (26), Expect = 2e-07
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 21 gttgttgacagaagatagagagcactaaggatgacatgcaag 62
||||||||||||||||||||||||| | ||||| |||||||
Sbjct: 7 gttgttgacagaagatagagagcacagatgatgaaatgcaag 48
>41295_ptc-MIR156h:mirbase
Length = 103
Score = 52.0 bits (26), Expect = 2e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 23 tgttgacagaagatagagagcactaaggatgacatgca 60
|||||||||||||||||||||||| | ||||| |||||
Sbjct: 9 tgttgacagaagatagagagcactgacgatgaaatgca 46
>40652_mtr-MIR156e:mirbase
Length = 172
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 ggttgttgacagaagatagagagcac 45
||||||||||||||||||||||||||
Sbjct: 1 ggttgttgacagaagatagagagcac 26
>40429_gma-MIR156e:mirbase
Length = 124
Score = 52.0 bits (26), Expect = 2e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 23 tgttgacagaagatagagagcactaaggatgacatgca 60
|||||||||||||||||||||||| | ||||| |||||
Sbjct: 19 tgttgacagaagatagagagcactgatgatgaaatgca 56
>40428_gma-MIR156d:mirbase
Length = 151
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 ggttgttgacagaagatagagagcac 45
||||||||||||||||||||||||||
Sbjct: 16 ggttgttgacagaagatagagagcac 41
Score = 46.1 bits (23), Expect = 1e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 149 tactctttcgtgctctctatacttctgtcaccacc 183
||||| || ||||||||||||||||||||| ||||
Sbjct: 102 tactcctttgtgctctctatacttctgtcatcacc 136
>41567_vvi-MIR156g:mirbase
Length = 103
Score = 50.1 bits (25), Expect = 7e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 gttgttgacagaagatagagagcac 45
|||||||||||||||||||||||||
Sbjct: 7 gttgttgacagaagatagagagcac 31
>41297_ptc-MIR156j:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 7e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 gttgttgacagaagatagagagcac 45
|||||||||||||||||||||||||
Sbjct: 7 gttgttgacagaagatagagagcac 31
>41296_ptc-MIR156i:mirbase
Length = 99
Score = 50.1 bits (25), Expect = 7e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 gttgttgacagaagatagagagcac 45
|||||||||||||||||||||||||
Sbjct: 7 gttgttgacagaagatagagagcac 31
>41294_ptc-MIR156g:mirbase
Length = 103
Score = 50.1 bits (25), Expect = 7e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 gttgttgacagaagatagagagcac 45
|||||||||||||||||||||||||
Sbjct: 7 gttgttgacagaagatagagagcac 31
>41084_tcc-MIR156e:mirbase
Length = 123
Score = 50.1 bits (25), Expect = 7e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 gttgttgacagaagatagagagcac 45
|||||||||||||||||||||||||
Sbjct: 17 gttgttgacagaagatagagagcac 41
>41077_gra-MIR157b:mirbase
Length = 91
Score = 50.1 bits (25), Expect = 7e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 gttgttgacagaagatagagagcac 45
|||||||||||||||||||||||||
Sbjct: 1 gttgttgacagaagatagagagcac 25
>41076_gra-MIR157a:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 7e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 gttgttgacagaagatagagagcac 45
|||||||||||||||||||||||||
Sbjct: 1 gttgttgacagaagatagagagcac 25
>40337_rco-MIR156h:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 7e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 gttgttgacagaagatagagagcac 45
|||||||||||||||||||||||||
Sbjct: 2 gttgttgacagaagatagagagcac 26
>41085_tcc-MIR156f:mirbase
Length = 124
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 ttgttgacagaagatagagagcac 45
||||||||||||||||||||||||
Sbjct: 18 ttgttgacagaagatagagagcac 41
>40653_mtr-MIR156f:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 ttgttgacagaagatagagagcac 45
||||||||||||||||||||||||
Sbjct: 3 ttgttgacagaagatagagagcac 26
>40431_gma-MIR156g:mirbase
Length = 118
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 ttgttgacagaagatagagagcac 45
||||||||||||||||||||||||
Sbjct: 21 ttgttgacagaagatagagagcac 44
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 25 ttgacagaagatagagagcac 45
|||||||||||||||||||||
Sbjct: 107 ttgacagaagatagagagcac 87
>40335_rco-MIR156f:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 ttgttgacagaagatagagagcac 45
||||||||||||||||||||||||
Sbjct: 3 ttgttgacagaagatagagagcac 26
>41566_vvi-MIR156f:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 tgttgacagaagatagagagcac 45
|||||||||||||||||||||||
Sbjct: 9 tgttgacagaagatagagagcac 31
>40655_mtr-MIR156h:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 tgttgacagaagatagagagcac 45
|||||||||||||||||||||||
Sbjct: 4 tgttgacagaagatagagagcac 26
>40427_gma-MIR156c:mirbase
Length = 185
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 tgttgacagaagatagagagcac 45
|||||||||||||||||||||||
Sbjct: 144 tgttgacagaagatagagagcac 166
>40011_ath-MIR157b:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 tgttgacagaagatagagagcac 45
|||||||||||||||||||||||
Sbjct: 17 tgttgacagaagatagagagcac 39
>40010_ath-MIR157a:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 tgttgacagaagatagagagcac 45
|||||||||||||||||||||||
Sbjct: 2 tgttgacagaagatagagagcac 24
>39799_aly-MIR157b:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 tgttgacagaagatagagagcac 45
|||||||||||||||||||||||
Sbjct: 2 tgttgacagaagatagagagcac 24
>39798_aly-MIR157a:mirbase
Length = 123
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 tgttgacagaagatagagagcac 45
|||||||||||||||||||||||
Sbjct: 14 tgttgacagaagatagagagcac 36
>41527_sly-MIR156c:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 25 ttgacagaagatagagagcac 45
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>41526_sly-MIR156b:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 25 ttgacagaagatagagagcac 45
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>41163_aqc-MIR156b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 26 tgacagaagatagagagcac 45
||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcac 20
>41162_aqc-MIR156a:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 26 tgacagaagatagagagcac 45
||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcac 20
>39727_smo-MIR156b:mirbase
Length = 112
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 26 tgacagaagatagagagcac 45
||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcac 31
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 155 ttcgtgctctctatacttctgtca 178
|||||||||||||| |||||||||
Sbjct: 77 ttcgtgctctctattcttctgtca 100
>39416_pta-MIR156b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 26 tgacagaagatagagagcac 45
||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcac 22
>39415_pta-MIR156a:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 26 tgacagaagatagagagcac 45
||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcac 22
