miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40291_bna-MIR171g:mirbase
Length = 80
Score = 159 bits (80), Expect = 5e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 21 gatattggcctggttcactcagattacacacgtactatatgcattctcttagttatctga 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatattggcctggttcactcagattacacacgtactatatgcattctcttagttatctga 60
Query: 81 ttgagccgcgccaatatctc 100
||||||||||||||||||||
Sbjct: 61 ttgagccgcgccaatatctc 80
>40322_bra-MIR171e:mirbase
Length = 119
Score = 157 bits (79), Expect = 2e-39
Identities = 108/119 (90%), Gaps = 9/119 (7%)
Strand = Plus / Plus
Query: 4 acgaaagagtcctctttgatattggcctggttcactcaga---------ttacacacgta 54
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 acgaaagagtcctctttgatattggcctggttcactcagatcttccagattacacacgta 60
Query: 55 ctatatgcattctcttagttatctgattgagccgcgccaatatctcagtgctctctcgt 113
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctatatacattctctcagttatctgattgagccgcgccaatatctcagtgctctctcgt 119
>40290_bna-MIR171f:mirbase
Length = 119
Score = 157 bits (79), Expect = 2e-39
Identities = 108/119 (90%), Gaps = 9/119 (7%)
Strand = Plus / Plus
Query: 4 acgaaagagtcctctttgatattggcctggttcactcaga---------ttacacacgta 54
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 acgaaagagtcctctttgatattggcctggttcactcagatcttccagattacacacgta 60
Query: 55 ctatatgcattctcttagttatctgattgagccgcgccaatatctcagtgctctctcgt 113
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctatatacattctctcagttatctgattgagccgcgccaatatctcagtgctctctcgt 119
>39849_aly-MIR171a:mirbase
Length = 198
Score = 81.8 bits (41), Expect = 1e-16
Identities = 58/61 (95%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 57 atatgcattctct-tag-ttatctgattgagccgcgccaatatctcagtgctctctcgtc 114
||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 107 atatgcattctctctagattatctgattgagccgcgccaatatctcagtactctctcgtc 166
Query: 115 t 115
|
Sbjct: 167 t 167
Score = 63.9 bits (32), Expect = 2e-11
Identities = 42/44 (95%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 1 agcacgaaagagtcctctttgatattggcctggttcactcagat 44
||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 38 agcacgagagagtcc-ctttgatattggcctggttcactcagat 80
>40060_ath-MIR171a:mirbase
Length = 123
Score = 73.8 bits (37), Expect = 2e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 73 ttatctgattgagccgcgccaatatctcagtgctctctcgt 113
||||||||||||||||||||||||||||||| |||||||||
Sbjct: 83 ttatctgattgagccgcgccaatatctcagtactctctcgt 123
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 17 ctttgatattggcctggttcactcagat 44
||||||||||||||||||||||||||||
Sbjct: 13 ctttgatattggcctggttcactcagat 40
>42640_tae-MIR171a:mirbase
Length = 130
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 76 tctgattgagccgcgccaatatctcagtgctct 108
||||||||||||| |||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatctcagtgctct 119
>39848_aly-MIR170:mirbase
Length = 212
Score = 56.0 bits (28), Expect = 6e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 75 atctgattgagccgcgccaatatctcagtgctctctcgtc 114
|||||||||||||| | |||||||||||| ||||||||||
Sbjct: 114 atctgattgagccgtgtcaatatctcagtcctctctcgtc 153
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 tgatattggcctggttcactcagatt 45
||||||||||||||||||||||||||
Sbjct: 74 tgatattggcctggttcactcagatt 99
>41981_osa-MIR171a:mirbase
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 74 tatctgattgagccgcgccaatatctc 100
|||||||||||||||||||||||||||
Sbjct: 63 tatctgattgagccgcgccaatatctc 89
>41538_sly-MIR171a:mirbase
Length = 122
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 17 ctttgatattggcctggttcactcaga 43
|||||||||||||||||||||||||||
Sbjct: 12 ctttgatattggcctggttcactcaga 38
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 tgattgagccgcgccaatatctcagt 103
||||||||||| ||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatctcagt 112
>42774_zma-MIR171n:mirbase
Length = 78
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 74 tatctgattgagccgcgccaatatct 99
||||||||||||||||||||||||||
Sbjct: 53 tatctgattgagccgcgccaatatct 78
>40059_ath-MIR170:mirbase
Length = 93
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 tgatattggcctggttcactcagatt 45
||||||||||||||||||||||||||
Sbjct: 15 tgatattggcctggttcactcagatt 40
Score = 52.0 bits (26), Expect = 9e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 75 atctgattgagccgcgccaatatctcagtgctctctcg 112
|||||||||||||| | |||||||||||| ||||||||
Sbjct: 56 atctgattgagccgtgtcaatatctcagtcctctctcg 93
>42764_zma-MIR171d:mirbase
Length = 121
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 76 tctgattgagccgcgccaatatctcagtgctct 108
||||||||||||| |||||||||||||| ||||
Sbjct: 80 tctgattgagccgtgccaatatctcagtactct 112
>42552_sbi-MIR171g:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 74 tatctgattgagccgcgccaatatc 98
|||||||||||||||||||||||||
Sbjct: 53 tatctgattgagccgcgccaatatc 77
>42549_sbi-MIR171d:mirbase
Length = 153
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 76 tctgattgagccgcgccaatatctcagtgctct 108
||||||||||||| |||||||||||||| ||||
Sbjct: 112 tctgattgagccgtgccaatatctcagtactct 144
>41985_osa-MIR171e:mirbase
Length = 119
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 76 tctgattgagccgcgccaatatctcagtgctct 108
||||||||||||| |||||||||| ||||||||
Sbjct: 87 tctgattgagccgtgccaatatcttagtgctct 119
>41890_hvu-MIR171:mirbase
Length = 173
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 76 tctgattgagccgcgccaatatctcagtgctct 108
||||||||||||| |||||||||| ||||||||
Sbjct: 110 tctgattgagccgtgccaatatcttagtgctct 142
>41389_ptc-MIR171i:mirbase
Length = 129
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tgatattggcctggttcactcagat 44
|||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcagat 34
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 tgattgagccgcgccaatatctcagt 103
||||||||||| ||||||||||||||
Sbjct: 100 tgattgagccgtgccaatatctcagt 125
>41386_ptc-MIR171f:mirbase
Length = 130
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 76 tctgattgagccgcgccaatatctcagtgctc 107
||||||||||||| |||||||||| |||||||
Sbjct: 99 tctgattgagccgtgccaatatcttagtgctc 130
>41123_tcc-MIR171h:mirbase
Length = 135
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 tgatattggcctggttcactcaga 43
||||||||||||||||||||||||
Sbjct: 20 tgatattggcctggttcactcaga 43
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 76 tctgattgagccgcgccaatatct 99
||||||||||||| ||||||||||
Sbjct: 93 tctgattgagccgtgccaatatct 116
>40364_rco-MIR171f:mirbase
Length = 111
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 tgatattggcctggttcactcaga 43
||||||||||||||||||||||||
Sbjct: 3 tgatattggcctggttcactcaga 26
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 tgattgagccgcgccaatatctcagt 103
||||||||||| ||||||||||||||
Sbjct: 86 tgattgagccgtgccaatatctcagt 111
>42761_zma-MIR171a:mirbase
Length = 99
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tctgattgagccgcgccaatatc 98
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgcgccaatatc 99
>41984_osa-MIR171d:mirbase
Length = 135
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 76 tctgattgagccgcgccaatatctcag 102
||||||||||||| |||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatctcag 129
>41764_bdi-MIR171a:mirbase
Length = 120
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgcgccaatatctc 100
|||||||||||||||||||||||
Sbjct: 50 tgattgagccgcgccaatatctc 72
>41626_vvi-MIR171e:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tctgattgagccgcgccaatatc 98
|||||||||||||||||||||||
Sbjct: 68 tctgattgagccgcgccaatatc 90
>40701_mtr-MIR171g:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 gatattggcctggttcactcaga 43
|||||||||||||||||||||||
Sbjct: 6 gatattggcctggttcactcaga 28
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 78 tgattgagccgcgccaatatctca 101
||||||||||| ||||||||||||
Sbjct: 80 tgattgagccgtgccaatatctca 103
>40698_mtr-MIR171d:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 gatattggcctggttcactcaga 43
|||||||||||||||||||||||
Sbjct: 6 gatattggcctggttcactcaga 28
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 78 tgattgagccgcgccaatatctca 101
||||||||||| ||||||||||||
Sbjct: 80 tgattgagccgtgccaatatctca 103
>42555_sbi-MIR171j:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ctgattgagccgcgccaatatc 98
||||||||||||||||||||||
Sbjct: 82 ctgattgagccgcgccaatatc 103
>41116_tcc-MIR171a:mirbase
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgcgccaatatct 99
||||||||||||||||||||||
Sbjct: 79 tgattgagccgcgccaatatct 100
>42765_zma-MIR171e:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 76 tctgattgagccgcgccaatatctcagtgctct 108
||||||||||||| |||||||||| ||| ||||
Sbjct: 85 tctgattgagccgtgccaatatcttagtactct 117
>41540_sly-MIR171c:mirbase
Length = 121
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgcgccaatatc 98
|||||||||||||||||||||
Sbjct: 78 tgattgagccgcgccaatatc 98
>41231_csi-MIR171a:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgcgccaatatc 98
|||||||||||||||||||||
Sbjct: 67 tgattgagccgcgccaatatc 87
>41211_ccl-MIR171:mirbase
Length = 321
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgattgagccgcgccaatatc 98
|||||||||||||||||||||
Sbjct: 122 tgattgagccgcgccaatatc 142
>42554_sbi-MIR171i:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 76 tctgattgagccgcgccaatatct 99
||||||||||||| ||||||||||
Sbjct: 66 tctgattgagccgtgccaatatct 89
>41874_far-MIR171:mirbase
Length = 130
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 75 atctgattgagccgcgccaatatc 98
|||||||||||||| |||||||||
Sbjct: 87 atctgattgagccgtgccaatatc 110
>41765_bdi-MIR171b:mirbase
Length = 164
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 75 atctgattgagccgcgccaatatc 98
|||||||||||||| |||||||||
Sbjct: 111 atctgattgagccgtgccaatatc 134
>41630_vvi-MIR171i:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 75 atctgattgagccgcgccaatatc 98
|||||||||||||| |||||||||
Sbjct: 66 atctgattgagccgtgccaatatc 89
>41627_vvi-MIR171f:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 79 gattgagccgcgccaatatc 98
||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatc 90
>41622_vvi-MIR171a:mirbase
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 75 atctgattgagccgcgccaatatc 98
|||||||||||||| |||||||||
Sbjct: 65 atctgattgagccgtgccaatatc 88
>41541_sly-MIR171d:mirbase
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 79 gattgagccgcgccaatatc 98
||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatc 92
>41391_ptc-MIR171k:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 79 gattgagccgcgccaatatc 98
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
>41388_ptc-MIR171h:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 75 atctgattgagccgcgccaatatc 98
|||||||||||||| |||||||||
Sbjct: 68 atctgattgagccgtgccaatatc 91
>41387_ptc-MIR171g:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 75 atctgattgagccgcgccaatatc 98
|||||||||||||| |||||||||
Sbjct: 68 atctgattgagccgtgccaatatc 91
>41385_ptc-MIR171e:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 75 atctgattgagccgcgccaatatc 98
|||||||||||||| |||||||||
Sbjct: 62 atctgattgagccgtgccaatatc 85
>41384_ptc-MIR171d:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 79 gattgagccgcgccaatatc 98
||||||||||||||||||||
Sbjct: 72 gattgagccgcgccaatatc 91
>41383_ptc-MIR171c:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 79 gattgagccgcgccaatatc 98
||||||||||||||||||||
Sbjct: 76 gattgagccgcgccaatatc 95
>41178_aqc-MIR171b:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 75 atctgattgagccgcgccaatatc 98
|||||||||||||| |||||||||
Sbjct: 52 atctgattgagccgtgccaatatc 75
>41118_tcc-MIR171c:mirbase
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 79 gattgagccgcgccaatatc 98
||||||||||||||||||||
Sbjct: 84 gattgagccgcgccaatatc 103
>41117_tcc-MIR171b:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 79 gattgagccgcgccaatatc 98
||||||||||||||||||||
Sbjct: 81 gattgagccgcgccaatatc 100
>40699_mtr-MIR171e:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 79 gattgagccgcgccaatatc 98
||||||||||||||||||||
Sbjct: 69 gattgagccgcgccaatatc 88
>40365_rco-MIR171g:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 79 gattgagccgcgccaatatc 98
||||||||||||||||||||
Sbjct: 65 gattgagccgcgccaatatc 84
>40363_rco-MIR171e:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 75 atctgattgagccgcgccaatatc 98
|||||||||||||| |||||||||
Sbjct: 56 atctgattgagccgtgccaatatc 79
>40361_rco-MIR171c:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 75 atctgattgagccgcgccaatatc 98
|||||||||||||| |||||||||
Sbjct: 59 atctgattgagccgtgccaatatc 82
>39479_ppt-MIR171b:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 79 gattgagccgcgccaatatc 98
||||||||||||||||||||
Sbjct: 65 gattgagccgcgccaatatc 84
>39478_ppt-MIR171a:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 79 gattgagccgcgccaatatc 98
||||||||||||||||||||
Sbjct: 64 gattgagccgcgccaatatc 83
