miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40294_bna-MIR390c:mirbase
Length = 128
Score = 254 bits (128), Expect = 1e-68
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 1 gcgtagtagagaagtagctgtaaagctcaggagggatagcgccatgactcatcaccatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgtagtagagaagtagctgtaaagctcaggagggatagcgccatgactcatcaccatta 60
Query: 61 ctatatgtctttgtatatgtaatggcgctatccatcctgagttccatggcttcttcttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctatatgtctttgtatatgtaatggcgctatccatcctgagttccatggcttcttcttgc 120
Query: 121 ttttatgt 128
||||||||
Sbjct: 121 ttttatgt 128
>40292_bna-MIR390a:mirbase
Length = 144
Score = 111 bits (56), Expect = 1e-25
Identities = 107/124 (86%)
Strand = Plus / Plus
Query: 3 gtagtagagaagtagctgtaaagctcaggagggatagcgccatgactcatcaccattact 62
||||| |||||||||||||||||||||||||||||||||||||| |||| | | ||
Sbjct: 13 gtagttgagaagtagctgtaaagctcaggagggatagcgccatgtctcaccggtactata 72
Query: 63 atatgtctttgtatatgtaatggcgctatccatcctgagttccatggcttcttcttgctt 122
| |||| | | ||| | || |||||||||||||||||||||| |||||||||||||||||
Sbjct: 73 aaatgtttgtatatctatattggcgctatccatcctgagttctatggcttcttcttgctt 132
Query: 123 ttat 126
||||
Sbjct: 133 ttat 136
>39863_aly-MIR390b:mirbase
Length = 127
Score = 69.9 bits (35), Expect = 4e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 83 tggcgctatccatcctgagttccatggcttcttcttgct 121
||||||||||||||||||||||||| |||||||||||||
Sbjct: 89 tggcgctatccatcctgagttccatagcttcttcttgct 127
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 5 agtagagaagtagctgtaaagctcaggagggatagcgccatga 47
|||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 1 agtagaaaaatagctataaagctcaggagggatagcgccatga 43
>39862_aly-MIR390a:mirbase
Length = 129
Score = 69.9 bits (35), Expect = 4e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 5 agtagagaagtagctgtaaagctcaggagggatagcgccatga 47
|||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 11 agtagagaagaatctgtaaagctcaggagggatagcgccatga 53
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tggcgctatccatcctgagtt 103
|||||||||||||||||||||
Sbjct: 78 tggcgctatccatcctgagtt 98
>40072_ath-MIR390a:mirbase
Length = 107
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 6 gtagagaagtagctgtaaagctcaggagggatagcgccatga 47
||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatga 42
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tggcgctatccatcctgagtt 103
|||||||||||||||||||||
Sbjct: 67 tggcgctatccatcctgagtt 87
>41237_csi-MIR390:mirbase
Length = 154
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 83 tggcgctatccatcctgagttccatggcttcttctt 118
||||||||||||||||||||| ||||||||||||||
Sbjct: 96 tggcgctatccatcctgagtttcatggcttcttctt 131
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 5 agtagagaagtagctgtaaagctcaggagggatagcgccatg 46
|||| ||||| | |||| ||||||||||||||||||||||||
Sbjct: 3 agtaaagaagaatctgttaagctcaggagggatagcgccatg 44
>40293_bna-MIR390b:mirbase
Length = 105
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 6 gtagagaagtagctgtaaagctcaggagggatagcgccat 45
||||||||| | ||||||||||||||||||||||||||||
Sbjct: 1 gtagagaagaatctgtaaagctcaggagggatagcgccat 40
>40073_ath-MIR390b:mirbase
Length = 120
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 83 tggcgctatccatcctgagttccatggcttcttctt 118
||||||||||||||||||||||||| ||||||||||
Sbjct: 85 tggcgctatccatcctgagttccatagcttcttctt 120
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 9 gagaagtagctgtaaagctcaggagggatagcgccatgactca 51
||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct: 1 gagaaatagctataaagctcaggagggatagcgccatggctca 43
>40468_gma-MIR390a:mirbase
Length = 105
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgccatg 46
|||||||||||||||||||||||||||||
Sbjct: 6 ctgtaaagctcaggagggatagcgccatg 34
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 85 gcgctatccatcctgagttccatggcttct 114
||||||||||||||||||| ||||||||||
Sbjct: 67 gcgctatccatcctgagtttcatggcttct 96
>40467_gma-MIR390a:mirbase
Length = 105
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgccatg 46
|||||||||||||||||||||||||||||
Sbjct: 6 ctgtaaagctcaggagggatagcgccatg 34
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 85 gcgctatccatcctgagttccatggcttct 114
||||||||||||||||||| ||||||||||
Sbjct: 67 gcgctatccatcctgagtttcatggcttct 96
>41131_tcc-MIR390b:mirbase
Length = 120
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgccat 45
||||||||||||||||||||||||||||
Sbjct: 16 ctgtaaagctcaggagggatagcgccat 43
>41640_vvi-MIR390:mirbase
Length = 140
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgccatga 47
|||| |||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccatga 35
>41415_ptc-MIR390c:mirbase
Length = 123
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgccatga 47
|||| |||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccatga 35
>41413_ptc-MIR390a:mirbase
Length = 119
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgccatga 47
|||| |||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccatga 35
>41052_ghr-MIR390b:mirbase
Length = 132
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 85 gcgctatccatcctgagttccatggcttcttcttgctt 122
||||||||||||||||||| ||| | ||||||||||||
Sbjct: 94 gcgctatccatcctgagtttcatcggttcttcttgctt 131
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgccatg 46
|||| ||||||||||||||||||||||||
Sbjct: 13 ctgttaagctcaggagggatagcgccatg 41
>41130_tcc-MIR390a:mirbase
Length = 129
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 85 gcgctatccatcctgagttccatggcttcttcttgct 121
||||||||||||||||||| ||| | |||||||||||
Sbjct: 88 gcgctatccatcctgagtttcatcggttcttcttgct 124
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgccat 45
|||| |||||||||||||||||||||||
Sbjct: 16 ctgttaagctcaggagggatagcgccat 43
>41053_ghr-MIR390c:mirbase
Length = 114
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgccatg 46
|||| ||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccatg 34
>41051_ghr-MIR390a:mirbase
Length = 124
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgccatg 46
|||| ||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgccatg 38
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 85 gcgctatccatcctgagttccatggcttcttctt 118
||||||||||||||||||| ||| | ||||||||
Sbjct: 91 gcgctatccatcctgagtttcatcggttcttctt 124
>40705_mtr-MIR390:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgccat 45
|||| |||||||||||||||||||||||
Sbjct: 1 ctgttaagctcaggagggatagcgccat 28
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 85 gcgctatccatcctgagttccatgg 109
||||||||||||||||||| |||||
Sbjct: 76 gcgctatccatcctgagtttcatgg 100
>40372_rco-MIR390b:mirbase
Length = 122
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 aagctcaggagggatagcgccatg 46
||||||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgccatg 29
>40469_gma-MIR390b:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagc 40
|||||||||||||||||||||||
Sbjct: 6 ctgtaaagctcaggagggatagc 28
>39485_ppt-MIR390a:mirbase
Length = 137
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 aagctcaggagggatagcgccat 45
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>41416_ptc-MIR390d:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgcc 43
|||| |||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tggcgctatccatcctgagtt 103
|||||||||||||||||||||
Sbjct: 77 tggcgctatccatcctgagtt 97
>41414_ptc-MIR390b:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgcc 43
|||| |||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 83 tggcgctatccatcctgagttccatggctt 112
||||||||||||||||||||| ||| ||||
Sbjct: 77 tggcgctatccatcctgagtttcattgctt 106
>40371_rco-MIR390a:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 18 ctgtaaagctcaggagggatagcgcc 43
|||| |||||||||||||||||||||
Sbjct: 1 ctgttaagctcaggagggatagcgcc 26
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 tggcgctatccatcctgagtt 103
|||||||||||||||||||||
Sbjct: 80 tggcgctatccatcctgagtt 100
>42785_zma-MIR390b:mirbase
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 aagctcaggagggatagcgcc 43
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42784_zma-MIR390a:mirbase
Length = 181
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 aagctcaggagggatagcgcc 43
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42565_sbi-MIR390:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 aagctcaggagggatagcgcc 43
|||||||||||||||||||||
Sbjct: 3 aagctcaggagggatagcgcc 23
>41996_osa-MIR390:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 aagctcaggagggatagcgcc 43
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41773_bdi-MIR390b:mirbase
Length = 186
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 aagctcaggagggatagcgcc 43
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41772_bdi-MIR390:mirbase
Length = 209
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 aagctcaggagggatagcgcc 43
|||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51
>39486_ppt-MIR390b:mirbase
Length = 175
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 aagctcaggagggatagcgcc 43
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>39487_ppt-MIR390c:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 agctcaggagggatagcgcc 43
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
