miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39349_cre-MIR1158:mirbase
Length = 521
Score = 523 bits (264), Expect = e-149
Identities = 264/264 (100%)
Strand = Plus / Plus
Query: 1 ggcgtgcgcagcggcggccgccgcggctgaggaagccatgatcgaggcagcgcaggccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcgtgcgcagcggcggccgccgcggctgaggaagccatgatcgaggcagcgcaggccac 60
Query: 61 attgtaggcctgccgcgcggctgtgtcacctctgaccaggtgcgacgggaagccgggctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attgtaggcctgccgcgcggctgtgtcacctctgaccaggtgcgacgggaagccgggctg 120
Query: 121 ctggggctgctgctgaccgccagtagcctcctccacgtcttgtgctagctccgcaagcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctggggctgctgctgaccgccagtagcctcctccacgtcttgtgctagctccgcaagcac 180
Query: 181 cgcgtcctctatgtccgtcatgtcggactcggcgtcggagccagggccctcggctcgagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgcgtcctctatgtccgtcatgtcggactcggcgtcggagccagggccctcggctcgagc 240
Query: 241 atcagtcgtccgcgctgctgctga 264
||||||||||||||||||||||||
Sbjct: 241 atcagtcgtccgcgctgctgctga 264
Score = 408 bits (206), Expect = e-114
Identities = 206/206 (100%)
Strand = Plus / Plus
Query: 316 cgacatgacggatattgaggacgcggtgcttgcggagctagcagaggacttggaggaggc 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cgacatgacggatattgaggacgcggtgcttgcggagctagcagaggacttggaggaggc 375
Query: 376 cactggcggtcagcagcagccccagcagcccagcttcccgtcgcacctggtcagcggtgc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cactggcggtcagcagcagccccagcagcccagcttcccgtcgcacctggtcagcggtgc 435
Query: 436 gacagccgcgcggcaagcatacaacgtggcctgcgctgcctccatcatggcttcctcagc 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gacagccgcgcggcaagcatacaacgtggcctgcgctgcctccatcatggcttcctcagc 495
Query: 496 cgcggcggccgccggcttcgagagcc 521
||||||||||||||||||||||||||
Sbjct: 496 cgcggcggccgccggcttcgagagcc 521
Score = 274 bits (138), Expect = 7e-74
Identities = 180/194 (92%)
Strand = Plus / Minus
Query: 316 cgacatgacggatattgaggacgcggtgcttgcggagctagcagaggacttggaggaggc 375
|||||||||||| || ||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct: 205 cgacatgacggacatagaggacgcggtgcttgcggagctagcacaagacgtggaggaggc 146
Query: 376 cactggcggtcagcagcagccccagcagcccagcttcccgtcgcacctggtcagcggtgc 435
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 145 tactggcggtcagcagcagccccagcagcccggcttcccgtcgcacctggtcagaggtga 86
Query: 436 gacagccgcgcggcaagcatacaacgtggcctgcgctgcctccatcatggcttcctcagc 495
|||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 85 cacagccgcgcggcaggcctacaatgtggcctgcgctgcctcgatcatggcttcctcagc 26
Query: 496 cgcggcggccgccg 509
||||||||||||||
Sbjct: 25 cgcggcggccgccg 12
Score = 274 bits (138), Expect = 7e-74
Identities = 180/194 (92%)
Strand = Plus / Minus
Query: 12 cggcggccgccgcggctgaggaagccatgatcgaggcagcgcaggccacattgtaggcct 71
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |
Sbjct: 509 cggcggccgccgcggctgaggaagccatgatggaggcagcgcaggccacgttgtatgctt 450
Query: 72 gccgcgcggctgtgtcacctctgaccaggtgcgacgggaagccgggctgctggggctgct 131
||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 449 gccgcgcggctgtcgcaccgctgaccaggtgcgacgggaagctgggctgctggggctgct 390
Query: 132 gctgaccgccagtagcctcctccacgtcttgtgctagctccgcaagcaccgcgtcctcta 191
||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||| |
Sbjct: 389 gctgaccgccagtggcctcctccaagtcctctgctagctccgcaagcaccgcgtcctcaa 330
Query: 192 tgtccgtcatgtcg 205
| ||||||||||||
Sbjct: 329 tatccgtcatgtcg 316
