miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40502_gma-MIR1520a:mirbase
Length = 150
Score = 297 bits (150), Expect = 1e-81
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 1 aaaggaatgttgaccgtcatgtgtcatgttcttattggatgatgactgttgtgtcatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaggaatgttgaccgtcatgtgtcatgttcttattggatgatgactgttgtgtcatgtt 60
Query: 61 ctgattggtcaatgaaaataacaatgcatttcatcttttatggagttgacatccaattag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgattggtcaatgaaaataacaatgcatttcatcttttatggagttgacatccaattag 120
Query: 121 aacatgatacatgacagtcatcatccaata 150
||||||||||||||||||||||||||||||
Sbjct: 121 aacatgatacatgacagtcatcatccaata 150
>40512_gma-MIR1520k:mirbase
Length = 128
Score = 137 bits (69), Expect = 3e-33
Identities = 111/124 (89%), Gaps = 2/124 (1%)
Strand = Plus / Plus
Query: 29 ttcttattggatgatgactgtt--gtgtcatgttctgattggtcaatgaaaataacaatg 86
||||||||||||||||| ||| |||||||||||||||| ||||||||||| | |||||
Sbjct: 1 ttcttattggatgatgattgtcacgtgtcatgttctgattagtcaatgaaaacagcaatg 60
Query: 87 catttcatcttttatggagttgacatccaattagaacatgatacatgacagtcatcatcc 146
||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||| ||
Sbjct: 61 tatttcatctttcatggtgttgacatccaatcagaacatgacacatgacagtcatcaacc 120
Query: 147 aata 150
||||
Sbjct: 121 aata 124
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Minus
Query: 29 ttcttattggatgatgactgt--tgtgtcatgttctgattgg 68
|||||||||| |||||||||| |||||||||||||||||||
Sbjct: 128 ttcttattggttgatgactgtcatgtgtcatgttctgattgg 87
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 11 tgaccgtcatgtgtcatgttcttattggatg 41
|||| ||||||||||||||||| ||||||||
Sbjct: 114 tgactgtcatgtgtcatgttctgattggatg 84
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 119 agaacatgatacatgacagtcatcatccaata 150
||||||||| || ||||| |||||||||||||
Sbjct: 36 agaacatgacacgtgacaatcatcatccaata 5
>40510_gma-MIR1520i:mirbase
Length = 144
Score = 133 bits (67), Expect = 4e-32
Identities = 103/114 (90%), Gaps = 2/114 (1%)
Strand = Plus / Plus
Query: 6 aatgttgaccgtcatgtgtcatgttcttattggatgatgactgtt--gtgtcatgttctg 63
||||||||| ||| |||||| ||||||||||||| |||||||| |||||||||||||
Sbjct: 2 aatgttgactatcacgtgtcacgttcttattggattatgactgtcacgtgtcatgttctg 61
Query: 64 attggtcaatgaaaataacaatgcatttcatcttttatggagttgacatccaat 117
|||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 62 attggtcaatgaaaataacaatacatttaatcttttatggagttgacattcaat 115
>40506_gma-MIR1520e:mirbase
Length = 164
Score = 131 bits (66), Expect = 2e-31
Identities = 111/125 (88%), Gaps = 2/125 (1%)
Strand = Plus / Plus
Query: 28 gttcttattggatgatgactgttg--tgtcatgttctgattggtcaatgaaaataacaat 85
||||| |||||||||||||||| |||||| |||| ||||||||||||||| | ||||
Sbjct: 18 gttctgattggatgatgactgtcacatgtcatattctaattggtcaatgaaaacagcaat 77
Query: 86 gcatttcatcttttatggagttgacatccaattagaacatgatacatgacagtcatcatc 145
||||||||||||| |||||||||||||||||| ||||||||| || |||||||| |||||
Sbjct: 78 gcatttcatctttcatggagttgacatccaatcagaacatgacacgtgacagtcgtcatc 137
Query: 146 caata 150
|||||
Sbjct: 138 caata 142
Score = 58.0 bits (29), Expect = 2e-09
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 11 tgaccgtcatgtgtcatgttcttattggatgatgactgt--tgtgtcatgttctgattgg 68
|||| ||||| ||||| ||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 164 tgactgtcatatgtcacgttcttattggatgacgactgtcacgtgtcatgttctgattgg 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 113 ccaattagaacatgatacatgacagtcatcatccaat 149
|||||||||| |||| | ||||||||||||||||||
Sbjct: 60 ccaattagaatatgacatgtgacagtcatcatccaat 24
>40514_gma-MIR1520m:mirbase
Length = 128
Score = 125 bits (63), Expect = 1e-29
Identities = 90/99 (90%)
Strand = Plus / Minus
Query: 52 tgtcatgttctgattggtcaatgaaaataacaatgcatttcatcttttatggagttgaca 111
|||||||||||||||| | |||||||| |||||| |||||||||||||||||||||||||
Sbjct: 103 tgtcatgttctgattgataaatgaaaacaacaattcatttcatcttttatggagttgaca 44
Query: 112 tccaattagaacatgatacatgacagtcatcatccaata 150
|||||| |||||||| || | |||||||||||||||||
Sbjct: 43 tccaatcagaacatggcacgtaacagtcatcatccaata 5
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Plus
Query: 29 ttcttattggatgatgactgtt--gtgtcatgttctgattgg 68
|||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 1 ttcttattggatgatgactgttacgtgccatgttctgattgg 42
>40513_gma-MIR1520l:mirbase
Length = 110
Score = 123 bits (62), Expect = 4e-29
Identities = 86/94 (91%)
Strand = Plus / Plus
Query: 51 gtgtcatgttctgattggtcaatgaaaataacaatgcatttcatcttttatggagttgac 110
||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 16 gtgtcatattctgattggtcaatgaaaacaacaatgcatttcatcttatatggagttgac 75
Query: 111 atccaattagaacatgatacatgacagtcatcat 144
|| |||| ||||||||| || ||| |||||||||
Sbjct: 76 attcaatcagaacatgacacgtgatagtcatcat 109
>40511_gma-MIR1520j:mirbase
Length = 176
Score = 121 bits (61), Expect = 2e-28
Identities = 127/148 (85%), Gaps = 2/148 (1%)
Strand = Plus / Minus
Query: 5 gaatgttgaccgtcatgtgtcatgttcttattggatgatgactgtt--gtgtcatgttct 62
||||||||| ||||||||||| ||||||||||||||||||| | |||| ||||| |
Sbjct: 176 gaatgttgattgtcatgtgtcacgttcttattggatgatgacgatcacgtgttatgttat 117
Query: 63 gattggtcaatgaaaataacaatgcatttcatcttttatggagttgacatccaattagaa 122
||||||| | ||||||||| |||||||||||||||| |||||||||| ||||||| | ||
Sbjct: 116 gattggttagtgaaaataataatgcatttcatctttcatggagttgatatccaatcataa 57
Query: 123 catgatacatgacagtcatcatccaata 150
|||| ||| ||||| ||||||| |||||
Sbjct: 56 catggtacgtgacaatcatcattcaata 29
>40504_gma-MIR1520c:mirbase
Length = 140
Score = 103 bits (52), Expect = 4e-23
Identities = 88/100 (88%)
Strand = Plus / Plus
Query: 51 gtgtcatgttctgattggtcaatgaaaataacaatgcatttcatcttttatggagttgac 110
||||||| ||||||||| ||||| ||||||| ||| ||||| || |||||||||||||||
Sbjct: 15 gtgtcatattctgattgatcaataaaaataataatacattttattttttatggagttgac 74
Query: 111 atccaattagaacatgatacatgacagtcatcatccaata 150
||||||| ||||||||| |||||||| |||||| |||||
Sbjct: 75 atccaatcagaacatgacacatgacaaacatcattcaata 114
Score = 50.1 bits (25), Expect = 5e-07
Identities = 55/64 (85%), Gaps = 2/64 (3%)
Strand = Plus / Minus
Query: 7 atgttgaccgtcatgtgtcatgttcttattggatgatgactgt--tgtgtcatgttctga 64
||||| || |||| |||||| |||||||||| |||||| ||| |||||||||||||||
Sbjct: 140 atgttaactgtcacgtgtcacgttcttattgaatgatgtttgtcatgtgtcatgttctga 81
Query: 65 ttgg 68
||||
Sbjct: 80 ttgg 77
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 gtcatgtgtcatgttcttattggatg 41
||||||||||||||||| ||||||||
Sbjct: 99 gtcatgtgtcatgttctgattggatg 74
>40518_gma-MIR1520q:mirbase
Length = 116
Score = 101 bits (51), Expect = 1e-22
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 50 tgtgtcatgttctgattggtcaatgaaaataacaatgcatttcatcttttatggagttga 109
|||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||
Sbjct: 109 tgtgtcatgttctgattggtcaataaaaacaacaatacatttcatcttttatggagttga 50
Query: 110 cat 112
|||
Sbjct: 49 cat 47
>40507_gma-MIR1520f:mirbase
Length = 103
Score = 97.6 bits (49), Expect = 2e-21
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 50 tgtgtcatgttctgattggtcaatgaaaataacaatgcatttcatcttt 98
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 tgtgtcatgttctgattggtcaatgaaaataacaatgcatttcatcttt 46
>40515_gma-MIR1520n:mirbase
Length = 96
Score = 83.8 bits (42), Expect = 3e-17
Identities = 75/86 (87%)
Strand = Plus / Minus
Query: 51 gtgtcatgttctgattggtcaatgaaaataacaatgcatttcatcttttatggagttgac 110
||||||||||||||||| | ||||||||||||||| ||||| || ||| ||||| |||||
Sbjct: 88 gtgtcatgttctgattgattaatgaaaataacaatacattttatttttaatggaattgac 29
Query: 111 atccaattagaacatgatacatgaca 136
|| |||| | ||||| ||||||||||
Sbjct: 28 attcaatcaaaacataatacatgaca 3
>40505_gma-MIR1520d:mirbase
Length = 111
Score = 75.8 bits (38), Expect = 8e-15
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 51 gtgtcatgttctgattggtcaatgaaaataacaatgcatttcatcttttatggagttgac 110
||||||||||||||||| |||||||||| ||||||| |||| | ||| || ||||| ||
Sbjct: 94 gtgtcatgttctgattgatcaatgaaaacaacaatgtatttgttttttcatagagttaac 35
Query: 111 atccaattagaacatgatacatgacagtcatcat 144
||||||| ||||||||| | ||| |||||||||
Sbjct: 34 atccaatcagaacatgacatgtgatagtcatcat 1
>40508_gma-MIR1520g:mirbase
Length = 108
Score = 67.9 bits (34), Expect = 2e-12
Identities = 79/94 (84%)
Strand = Plus / Minus
Query: 51 gtgtcatgttctgattggtcaatgaaaataacaatgcatttcatcttttatggagttgac 110
||||||||||||||||| ||||||| || || |||| |||| ||||| ||||| | |
Sbjct: 94 gtgtcatgttctgattgatcaatgataacaataatgtattttatcttccatggattcaag 35
Query: 111 atccaattagaacatgatacatgacagtcatcat 144
|| |||||||||||||| || |||||||||||||
Sbjct: 34 attcaattagaacatgacacgtgacagtcatcat 1
>40503_gma-MIR1520b:mirbase
Length = 129
Score = 50.1 bits (25), Expect = 5e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 108 gacatccaattagaacatgatacatgacagtcatcat 144
|||||||||| ||||||||| || |||||||||||||
Sbjct: 74 gacatccaatcagaacatgacacgtgacagtcatcat 110
Score = 48.1 bits (24), Expect = 2e-06
Identities = 42/47 (89%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 21 gtgtcatgttcttattggatgatgactgtt--gtgtcatgttctgat 65
|||||| |||||||||| ||||||||| || |||||||||||||||
Sbjct: 2 gtgtcacgttcttattgaatgatgactattacgtgtcatgttctgat 48
Score = 44.1 bits (22), Expect = 3e-05
Identities = 43/49 (87%), Gaps = 2/49 (4%)
Strand = Plus / Minus
Query: 22 tgtcatgttcttattggatgatgactgtt--gtgtcatgttctgattgg 68
||||| ||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 127 tgtcacgttcttattaaatgatgactgtcacgtgtcatgttctgattgg 79
Score = 40.1 bits (20), Expect = 5e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 6 aatgttgaccgtcatgtgtcatgttcttattggatg 41
|||| |||| |||| |||||||||||| ||||||||
Sbjct: 111 aatgatgactgtcacgtgtcatgttctgattggatg 76
>40517_gma-MIR1520p:mirbase
Length = 139
Score = 48.1 bits (24), Expect = 2e-06
Identities = 51/59 (86%), Gaps = 2/59 (3%)
Strand = Plus / Minus
Query: 22 tgtcatgttcttattggatgatgactgt--tgtgtcatgttctgattggtcaatgaaaa 78
||||| ||| |||||||||||||||||| ||| ||||| |||||||||||||||||
Sbjct: 136 tgtcacgttgttattggatgatgactgtcacatgttatgttttgattggtcaatgaaaa 78
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 22 tgtcatgttcttattggatgatgac 46
||||||||| |||||||||||||||
Sbjct: 4 tgtcatgttgttattggatgatgac 28
