miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40504_gma-MIR1520c:mirbase
Length = 140
Score = 278 bits (140), Expect = 1e-75
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 1 atgatgactgtcacgtgtcatattctgattgatcaataaaaataataatacattttattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgatgactgtcacgtgtcatattctgattgatcaataaaaataataatacattttattt 60
Query: 61 tttatggagttgacatccaatcagaacatgacacatgacaaacatcattcaataagaacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttatggagttgacatccaatcagaacatgacacatgacaaacatcattcaataagaacg 120
Query: 121 tgacacgtgacagttaacat 140
||||||||||||||||||||
Sbjct: 121 tgacacgtgacagttaacat 140
>40506_gma-MIR1520e:mirbase
Length = 164
Score = 123 bits (62), Expect = 4e-29
Identities = 116/134 (86%)
Strand = Plus / Plus
Query: 1 atgatgactgtcacgtgtcatattctgattgatcaataaaaataataatacattttattt 60
|||||||||||||| ||||||||||| |||| ||||| |||| | ||| ||||| || |
Sbjct: 29 atgatgactgtcacatgtcatattctaattggtcaatgaaaacagcaatgcatttcatct 88
Query: 61 tttatggagttgacatccaatcagaacatgacacatgacaaacatcattcaataagaacg 120
|| ||||||||||||||||||||||||||||||| ||||| | |||| |||||||||||
Sbjct: 89 ttcatggagttgacatccaatcagaacatgacacgtgacagtcgtcatccaataagaacg 148
Query: 121 tgacacgtgacagt 134
||||| |||||||
Sbjct: 149 tgacatatgacagt 162
Score = 48.1 bits (24), Expect = 2e-06
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 77 ccaatcagaacatgacacatgacaaacatcattcaataagaacgtgacacgtgacagtta 136
||||| |||| |||||| ||||| |||||| |||| ||||||||| ||||||||||||
Sbjct: 60 ccaattagaatatgacatgtgacagtcatcatccaatcagaacgtgatacgtgacagtta 1
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1 atgatgactgtcacgtgtcatattctgattg 31
|||| |||||||||||||||| |||||||||
Sbjct: 136 atgacgactgtcacgtgtcatgttctgattg 106
>40511_gma-MIR1520j:mirbase
Length = 176
Score = 111 bits (56), Expect = 1e-25
Identities = 119/140 (85%)
Strand = Plus / Minus
Query: 1 atgatgactgtcacgtgtcatattctgattgatcaataaaaataataatacattttattt 60
|||||||| |||||||| || || |||||| | | | ||||||||||| ||||| || |
Sbjct: 142 atgatgacgatcacgtgttatgttatgattggttagtgaaaataataatgcatttcatct 83
Query: 61 tttatggagttgacatccaatcagaacatgacacatgacaaacatcattcaataagaacg 120
|| |||||||||| ||||||||| |||||| || |||||| ||||||||||||||||||
Sbjct: 82 ttcatggagttgatatccaatcataacatggtacgtgacaatcatcattcaataagaacg 23
Query: 121 tgacacgtgacagttaacat 140
||||| |||||||| |||||
Sbjct: 22 tgacatgtgacagtcaacat 3
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 103 catcattcaataagaacgtgacacgtgaca 132
|||||| ||||||||||||||||| |||||
Sbjct: 137 catcatccaataagaacgtgacacatgaca 166
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 74 catccaatcagaacatgacacatgacaaacatcattc 110
|||||||| ||||| ||||||||||||| || |||||
Sbjct: 140 catccaataagaacgtgacacatgacaatcaacattc 176
>40510_gma-MIR1520i:mirbase
Length = 144
Score = 111 bits (56), Expect = 1e-25
Identities = 86/96 (89%)
Strand = Plus / Plus
Query: 4 atgactgtcacgtgtcatattctgattgatcaataaaaataataatacattttatttttt 63
|||||||||||||||||| ||||||||| ||||| ||||||| ||||||||| || ||||
Sbjct: 38 atgactgtcacgtgtcatgttctgattggtcaatgaaaataacaatacatttaatctttt 97
Query: 64 atggagttgacatccaatcagaacatgacacatgac 99
||||||||||||| |||||| ||| |||||| ||||
Sbjct: 98 atggagttgacattcaatcaaaacgtgacacgtgac 133
Score = 71.9 bits (36), Expect = 1e-13
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 77 ccaatcagaacatgacacatgacaaacatcattcaataagaacgtgacacgtgacagtta 136
|||||||||||||||||| ||||| ||| || ||||||||||||||||||||| ||| |
Sbjct: 66 ccaatcagaacatgacacgtgacagtcataatccaataagaacgtgacacgtgatagtca 7
Query: 137 acat 140
||||
Sbjct: 6 acat 3
>40515_gma-MIR1520n:mirbase
Length = 96
Score = 109 bits (55), Expect = 6e-25
Identities = 85/95 (89%)
Strand = Plus / Minus
Query: 7 actgtcacgtgtcatattctgattgatcaataaaaataataatacattttattttttatg 66
||||||||||||||| ||||||||||| ||| ||||||| |||||||||||||||| |||
Sbjct: 96 actgtcacgtgtcatgttctgattgattaatgaaaataacaatacattttatttttaatg 37
Query: 67 gagttgacatccaatcagaacatgacacatgacaa 101
|| ||||||| |||||| ||||| | |||||||||
Sbjct: 36 gaattgacattcaatcaaaacataatacatgacaa 2
>40513_gma-MIR1520l:mirbase
Length = 110
Score = 107 bits (54), Expect = 2e-24
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 1 atgatgactgtcacgtgtcatattctgattgatcaataaaaataataatacattttattt 60
||||||| ||||||||||||||||||||||| ||||| |||| || ||| ||||| || |
Sbjct: 2 atgatgattgtcacgtgtcatattctgattggtcaatgaaaacaacaatgcatttcatct 61
Query: 61 tttatggagttgacatccaatcagaacatgacac 94
| |||||||||||||| |||||||||||||||||
Sbjct: 62 tatatggagttgacattcaatcagaacatgacac 95
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1 atgatgactgtcacgtgtcatattctgattga 32
||||||||| ||||||||||| ||||||||||
Sbjct: 109 atgatgactatcacgtgtcatgttctgattga 78
>40502_gma-MIR1520a:mirbase
Length = 150
Score = 103 bits (52), Expect = 3e-23
Identities = 88/100 (88%)
Strand = Plus / Plus
Query: 15 gtgtcatattctgattgatcaataaaaataataatacattttattttttatggagttgac 74
||||||| ||||||||| ||||| ||||||| ||| ||||| || |||||||||||||||
Sbjct: 51 gtgtcatgttctgattggtcaatgaaaataacaatgcatttcatcttttatggagttgac 110
Query: 75 atccaatcagaacatgacacatgacaaacatcattcaata 114
||||||| ||||||||| |||||||| |||||| |||||
Sbjct: 111 atccaattagaacatgatacatgacagtcatcatccaata 150
Score = 50.1 bits (25), Expect = 4e-07
Identities = 55/64 (85%), Gaps = 2/64 (3%)
Strand = Plus / Minus
Query: 77 ccaatcagaacatgacacatgacaaacatcattcaataagaacgtgacacgtgacagtta 136
||||||||||||||||||| ||| |||||| |||||||||| |||||| |||| || |
Sbjct: 68 ccaatcagaacatgacaca--acagtcatcatccaataagaacatgacacatgacggtca 11
Query: 137 acat 140
||||
Sbjct: 10 acat 7
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 74 catccaatcagaacatgacacatgac 99
|||||||| |||||||||||||||||
Sbjct: 41 catccaataagaacatgacacatgac 16
>40514_gma-MIR1520m:mirbase
Length = 128
Score = 99.6 bits (50), Expect = 5e-22
Identities = 95/110 (86%)
Strand = Plus / Minus
Query: 9 tgtcacgtgtcatattctgattgatcaataaaaataataatacattttattttttatgga 68
|||||| |||||| ||||||||||| ||| |||| || ||| ||||| || |||||||||
Sbjct: 110 tgtcacatgtcatgttctgattgataaatgaaaacaacaattcatttcatcttttatgga 51
Query: 69 gttgacatccaatcagaacatgacacatgacaaacatcattcaataagaa 118
|||||||||||||||||||||| ||| | ||| |||||| |||||||||
Sbjct: 50 gttgacatccaatcagaacatggcacgtaacagtcatcatccaataagaa 1
Score = 50.1 bits (25), Expect = 4e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 78 caatcagaacatgacacatgacaaacatcattcaataagaa 118
|||||||||||||||| |||||| |||||||||||||||
Sbjct: 88 caatcagaacatgacatgtgacaattatcattcaataagaa 128
>40512_gma-MIR1520k:mirbase
Length = 128
Score = 91.7 bits (46), Expect = 1e-19
Identities = 100/118 (84%)
Strand = Plus / Plus
Query: 1 atgatgactgtcacgtgtcatattctgattgatcaataaaaataataatacattttattt 60
||||||| ||||||||||||| |||||||| ||||| |||| | ||| |||| || |
Sbjct: 11 atgatgattgtcacgtgtcatgttctgattagtcaatgaaaacagcaatgtatttcatct 70
Query: 61 tttatggagttgacatccaatcagaacatgacacatgacaaacatcattcaataagaa 118
|| |||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 71 ttcatggtgttgacatccaatcagaacatgacacatgacagtcatcaaccaataagaa 128
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 79 aatcagaacatgacacatgacaaacatcattcaataagaa 118
|||||||||||||||| |||||| |||||| |||||||||
Sbjct: 40 aatcagaacatgacacgtgacaatcatcatccaataagaa 1
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 2 tgatgactgtcacgtgtcatattctgattg 31
|||||||||||| ||||||| |||||||||
Sbjct: 117 tgatgactgtcatgtgtcatgttctgattg 88
>40505_gma-MIR1520d:mirbase
Length = 111
Score = 81.8 bits (41), Expect = 1e-16
Identities = 74/85 (87%)
Strand = Plus / Minus
Query: 9 tgtcacgtgtcatattctgattgatcaataaaaataataatacattttattttttatgga 68
||||||||||||| ||||||||||||||| |||| || ||| |||| ||||| || ||
Sbjct: 100 tgtcacgtgtcatgttctgattgatcaatgaaaacaacaatgtatttgttttttcataga 41
Query: 69 gttgacatccaatcagaacatgaca 93
||| |||||||||||||||||||||
Sbjct: 40 gttaacatccaatcagaacatgaca 16
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 78 caatcagaacatgacacatgacaa 101
||||||||||||||||| ||||||
Sbjct: 78 caatcagaacatgacacgtgacaa 101
>40518_gma-MIR1520q:mirbase
Length = 116
Score = 79.8 bits (40), Expect = 5e-16
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 9 tgtcacgtgtcatattctgattgatcaataaaaataataatacattttattttttatgga 68
||||| ||||||| ||||||||| |||||||||| || ||||||||| || |||||||||
Sbjct: 114 tgtcatgtgtcatgttctgattggtcaataaaaacaacaatacatttcatcttttatgga 55
Query: 69 gttgacat 76
||||||||
Sbjct: 54 gttgacat 47
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 ccaatcagaacatgacacatgacaa 101
|||||||||||||||||||||||||
Sbjct: 91 ccaatcagaacatgacacatgacaa 115
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 9 tgtcacgtgtcatattctgattgatcaataaaaataa 45
||||||||||||| ||||||| || |||||||||||
Sbjct: 4 tgtcacgtgtcatgatctgattaattaataaaaataa 40
>40503_gma-MIR1520b:mirbase
Length = 129
Score = 75.8 bits (38), Expect = 8e-15
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 72 gacatccaatcagaacatgacacatgacaaacatcattcaataagaacgtgaca 125
||||||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct: 74 gacatccaatcagaacatgacacgtgacagtcatcatttaataagaacgtgaca 127
Score = 56.0 bits (28), Expect = 7e-09
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 80 atcagaacatgacacatgacaaacatcattcaataagaacgtgacacg 127
||||||||||||||| | | | |||||||||||||||||||||||||
Sbjct: 48 atcagaacatgacacgtaatagtcatcattcaataagaacgtgacacg 1
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 atgatgactgtcacgtgtcatattctgattg 31
||||||||||||||||||||| |||||||||
Sbjct: 110 atgatgactgtcacgtgtcatgttctgattg 80
>40508_gma-MIR1520g:mirbase
Length = 108
Score = 63.9 bits (32), Expect = 3e-11
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 1 atgatgactgtcacgtgtcatattctgattgatcaataaaaataataatacattttattt 60
||||||| ||||||||||||| ||||||||||||||| | || |||||| ||||||| |
Sbjct: 108 atgatgattgtcacgtgtcatgttctgattgatcaatgataacaataatgtattttatct 49
Query: 61 tttatggagttgacatccaatcagaacatgacacatgaca 100
| ||||| | | || |||| |||||||||||| |||||
Sbjct: 48 tccatggattcaagattcaattagaacatgacacgtgaca 9
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 atgatgactgtcacgtgtcatattctgattga 32
||||||||||||||||||||| |||| |||||
Sbjct: 1 atgatgactgtcacgtgtcatgttctaattga 32
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 78 caatcagaacatgacacatgacaaacatcat 108
||||||||||||||||| |||||| ||||||
Sbjct: 78 caatcagaacatgacacgtgacaatcatcat 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 107 attcaataagaacgtgacacgtgacagt 134
||||||| ||||| ||||||||||||||
Sbjct: 34 attcaattagaacatgacacgtgacagt 7
>40507_gma-MIR1520f:mirbase
Length = 103
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 ccaatcagaacatgacacatgacaa 101
|||||||||||||||||||||||||
Sbjct: 76 ccaatcagaacatgacacatgacaa 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 79 aatcagaacatgacacatgacaaacatcattcaataagaa 118
|||||||||||||||| |||||| | ||||| | ||||||
Sbjct: 40 aatcagaacatgacacgtgacaatcgtcatttagtaagaa 1
>40516_gma-MIR1520o:mirbase
Length = 193
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 74 catccaatcagaacatgacacatgacaa 101
||||||||||||| |||||||||||||
Sbjct: 45 catccaatcagaatgtgacacatgacaa 18
