miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40505_gma-MIR1520d:mirbase
Length = 111
Score = 220 bits (111), Expect = 2e-58
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1 atgatgactatcacatgtcatgttctgattggatgttaactctatgaaaaaacaaataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgatgactatcacatgtcatgttctgattggatgttaactctatgaaaaaacaaataca 60
Query: 61 ttgttgttttcattgatcaatcagaacatgacacgtgacaattatcatcca 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgttgttttcattgatcaatcagaacatgacacgtgacaattatcatcca 111
>40512_gma-MIR1520k:mirbase
Length = 128
Score = 115 bits (58), Expect = 7e-27
Identities = 97/110 (88%)
Strand = Plus / Minus
Query: 2 tgatgactatcacatgtcatgttctgattggatgttaactctatgaaaaaacaaatacat 61
|||||||| ||| ||||||||||||||||||||| ||| | |||||| | ||||||||
Sbjct: 117 tgatgactgtcatgtgtcatgttctgattggatgtcaacaccatgaaagatgaaatacat 58
Query: 62 tgttgttttcattgatcaatcagaacatgacacgtgacaattatcatcca 111
|| |||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 57 tgctgttttcattgactaatcagaacatgacacgtgacaatcatcatcca 8
>40513_gma-MIR1520l:mirbase
Length = 110
Score = 113 bits (57), Expect = 3e-26
Identities = 96/109 (88%)
Strand = Plus / Minus
Query: 1 atgatgactatcacatgtcatgttctgattggatgttaactctatgaaaaaacaaataca 60
|||||||||||||| |||||||||||||||| |||| ||||| || || | |||| ||
Sbjct: 109 atgatgactatcacgtgtcatgttctgattgaatgtcaactccatataagatgaaatgca 50
Query: 61 ttgttgttttcattgatcaatcagaacatgacacgtgacaattatcatc 109
|||||||||||||||| ||||||||| ||||||||||||||| ||||||
Sbjct: 49 ttgttgttttcattgaccaatcagaatatgacacgtgacaatcatcatc 1
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 tcaatcagaacatgacacgtga 98
||||||||||||||||||||||
Sbjct: 78 tcaatcagaacatgacacgtga 99
>40514_gma-MIR1520m:mirbase
Length = 128
Score = 103 bits (52), Expect = 3e-23
Identities = 94/108 (87%)
Strand = Plus / Plus
Query: 1 atgatgactatcacatgtcatgttctgattggatgttaactctatgaaaaaacaaataca 60
||||||||| | || || |||||||||||||||||| ||||| || ||| | |||| |
Sbjct: 11 atgatgactgttacgtgccatgttctgattggatgtcaactccataaaagatgaaatgaa 70
Query: 61 ttgttgttttcattgatcaatcagaacatgacacgtgacaattatcat 108
|||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 71 ttgttgttttcatttatcaatcagaacatgacatgtgacaattatcat 118
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 11 tcacatgtcatgttctgattg 31
|||||||||||||||||||||
Sbjct: 108 tcacatgtcatgttctgattg 88
>40508_gma-MIR1520g:mirbase
Length = 108
Score = 95.6 bits (48), Expect = 6e-21
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 1 atgatgactatcacatgtcatgttctgattggatgttaactctatgaaaaaacaaataca 60
||||||||| |||| ||||||||||| |||| || || | || ||| || | |||||||
Sbjct: 1 atgatgactgtcacgtgtcatgttctaattgaatcttgaatccatggaagataaaataca 60
Query: 61 ttgttgttttcattgatcaatcagaacatgacacgtgacaattatcat 108
|| ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 61 ttattgttatcattgatcaatcagaacatgacacgtgacaatcatcat 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 77 tcaatcagaacatgacacgtgaca 100
||||| ||||||||||||||||||
Sbjct: 32 tcaattagaacatgacacgtgaca 9
>40506_gma-MIR1520e:mirbase
Length = 164
Score = 93.7 bits (47), Expect = 3e-20
Identities = 95/111 (85%)
Strand = Plus / Minus
Query: 1 atgatgactatcacatgtcatgttctgattggatgttaactctatgaaaaaacaaataca 60
|||| |||| |||| ||||||||||||||||||||| ||||| |||||| | |||| ||
Sbjct: 136 atgacgactgtcacgtgtcatgttctgattggatgtcaactccatgaaagatgaaatgca 77
Query: 61 ttgttgttttcattgatcaatcagaacatgacacgtgacaattatcatcca 111
||| |||||||||||| |||| |||| |||||| |||||| | ||||||||
Sbjct: 76 ttgctgttttcattgaccaattagaatatgacatgtgacagtcatcatcca 26
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 caatcagaacatgacacgtgaca 100
|||||||||||||||||||||||
Sbjct: 106 caatcagaacatgacacgtgaca 128
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1 atgatgactatcacatgtcatgttctgattgg 32
||||||||| ||||||||||| |||| |||||
Sbjct: 29 atgatgactgtcacatgtcatattctaattgg 60
>40504_gma-MIR1520c:mirbase
Length = 140
Score = 81.8 bits (41), Expect = 1e-16
Identities = 74/85 (87%)
Strand = Plus / Minus
Query: 16 tgtcatgttctgattggatgttaactctatgaaaaaacaaatacattgttgttttcattg 75
||||||||||||||||||||| ||||| || ||||| |||| ||| || |||| ||||
Sbjct: 93 tgtcatgttctgattggatgtcaactccataaaaaataaaatgtattattatttttattg 34
Query: 76 atcaatcagaacatgacacgtgaca 100
||||||||||| |||||||||||||
Sbjct: 33 atcaatcagaatatgacacgtgaca 9
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 78 caatcagaacatgacacgtgacaa 101
||||||||||||||||| ||||||
Sbjct: 78 caatcagaacatgacacatgacaa 101
>40502_gma-MIR1520a:mirbase
Length = 150
Score = 75.8 bits (38), Expect = 6e-15
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 1 atgatgactatcacatgtcatgttctgattggatgttaactctatgaaaaaacaaataca 60
||||||||| ||| | ||||||||| ||||||||| ||||| || ||| | |||| ||
Sbjct: 144 atgatgactgtcatgtatcatgttctaattggatgtcaactccataaaagatgaaatgca 85
Query: 61 ttgttgttttcattgatcaatcagaacatgacac 94
||||| |||||||||| |||||||||||||||||
Sbjct: 84 ttgttattttcattgaccaatcagaacatgacac 51
>40510_gma-MIR1520i:mirbase
Length = 144
Score = 67.9 bits (34), Expect = 1e-12
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 11 tcacatgtcatgttctgattggatgttaactctatgaaaaaacaaatacattgttgtttt 70
|||| ||||| ||| |||||| |||| ||||| || ||| | |||| |||||| ||||
Sbjct: 132 tcacgtgtcacgttttgattgaatgtcaactccataaaagattaaatgtattgttatttt 73
Query: 71 cattgatcaatcagaacatgacacgtgaca 100
|||||| |||||||||||||||||||||||
Sbjct: 72 cattgaccaatcagaacatgacacgtgaca 43
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 4 atgactatcacatgtcatgttctgattgg 32
|||||| |||| |||||||||||||||||
Sbjct: 38 atgactgtcacgtgtcatgttctgattgg 66
>40515_gma-MIR1520n:mirbase
Length = 96
Score = 65.9 bits (33), Expect = 6e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 60 attgttgttttcattgatcaatcagaacatgacacgtgaca 100
|||||| |||||||| |||||||||||||||||||||||||
Sbjct: 54 attgttattttcattaatcaatcagaacatgacacgtgaca 94
>40507_gma-MIR1520f:mirbase
Length = 103
Score = 65.9 bits (33), Expect = 6e-12
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 54 aaatacattgttgttttcattgatcaatcagaacatgacacgtgacaat 102
|||| ||||||| |||||||||| ||||||||||||||||| |||||||
Sbjct: 53 aaatgcattgttattttcattgaccaatcagaacatgacacatgacaat 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 79 aatcagaacatgacacgtgacaat 102
||||||||||||||||||||||||
Sbjct: 40 aatcagaacatgacacgtgacaat 17
>40518_gma-MIR1520q:mirbase
Length = 116
Score = 61.9 bits (31), Expect = 9e-11
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 60 attgttgttttcattgatcaatcagaacatgacacgtgacaat 102
||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 74 attgttgtttttattgaccaatcagaacatgacacatgacaat 116
>40503_gma-MIR1520b:mirbase
Length = 129
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1 atgatgactatcacatgtcatgttctgattggatgt 36
||||||||| |||| |||||||||||||||||||||
Sbjct: 110 atgatgactgtcacgtgtcatgttctgattggatgt 75
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 60 attgttgttttcattgatcaatcagaacatgacacgt 96
||||||||| |||||| || |||||||||||||||||
Sbjct: 68 attgttgttgtcattggtcgatcagaacatgacacgt 32
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 caatcagaacatgacacgtgaca 100
|||||||||||||||||||||||
Sbjct: 80 caatcagaacatgacacgtgaca 102
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 atgatgactatcacatgtcatgttctgat 29
||||||||||| || ||||||||||||||
Sbjct: 20 atgatgactattacgtgtcatgttctgat 48
