miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40525_gma-MIR1526:mirbase
Length = 174
Score = 345 bits (174), Expect = 7e-96
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 1 aacaaaaattttatttttcttcttccggatcaagttgatccggatcttccggatcaactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacaaaaattttatttttcttcttccggatcaagttgatccggatcttccggatcaactt 60
Query: 61 gatccgtaagagacttccggattaagttgatccagaagttacggatcaagttaatccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatccgtaagagacttccggattaagttgatccagaagttacggatcaagttaatccaga 120
Query: 121 agagactttcggatcaactgatccggaagaggaaaattaagcaaggataatttt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agagactttcggatcaactgatccggaagaggaaaattaagcaaggataatttt 174
Score = 61.9 bits (31), Expect = 1e-10
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 21 tcttccggatcaagttgatccggatcttccggatcaacttgatccgtaaga 71
|||| ||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 71 tcttacggatcaagttgatccggaagatccggatcaacttgatccggaaga 21
>40565_gma-MIR4361:mirbase
Length = 63
Score = 75.8 bits (38), Expect = 1e-14
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 45 tcttccggatcaacttgatccgtaagagacttccggat 82
||||||||||||||||||||||||||||||||||||||
Sbjct: 45 tcttccggatcaacttgatccgtaagagacttccggat 8
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 99 ttacggatcaagttaatccagaagagactttcggatcaact 139
|||||||||||||| |||| |||||||||| ||||||||||
Sbjct: 21 ttacggatcaagttgatccggaagagacttacggatcaact 61
Score = 46.1 bits (23), Expect = 9e-06
Identities = 48/56 (85%), Gaps = 4/56 (7%)
Strand = Plus / Plus
Query: 31 caagttgatccgga----tcttccggatcaacttgatccgtaagagacttccggat 82
|||||||||||||| |||| |||||||| |||||||| ||||||||| |||||
Sbjct: 1 caagttgatccggaagtctcttacggatcaagttgatccggaagagacttacggat 56
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 tcttccggatcaagttgatccgga 44
|||| |||||||||||||||||||
Sbjct: 19 tcttacggatcaagttgatccgga 42
>40575_gma-MIR4369:mirbase
Length = 79
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 45 tcttccggatcaacttgatccgtaagagacttccggat 82
|||| ||||||||||||||||| ||||||||| |||||
Sbjct: 7 tctttcggatcaacttgatccggaagagacttacggat 44
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 tcttccggatcaagttgatccg 42
||||||||||||||||||||||
Sbjct: 33 tcttccggatcaagttgatccg 12
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 46 cttccggatcaacttgatccgtaag 70
||||||||||| |||||||||||||
Sbjct: 72 cttccggatcagcttgatccgtaag 48
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 45 tcttccggatcaacttgatccgtaagag 72
||||||||||||| |||||||| |||||
Sbjct: 33 tcttccggatcaagttgatccgaaagag 6
>40549_gma-MIR4347:mirbase
Length = 141
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 50 cggatcaacttgatccgtaaga 71
||||||||||||||||||||||
Sbjct: 36 cggatcaacttgatccgtaaga 15
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19 cttcttccggatcaagttgatccg 42
|||||| |||||||||||||||||
Sbjct: 13 cttcttacggatcaagttgatccg 36
>40545_gma-MIR4343b:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 5e-04
Identities = 51/61 (83%), Gaps = 4/61 (6%)
Strand = Plus / Minus
Query: 15 ttttcttcttccggatcaagttgatccgga----tcttccggatcaacttgatccgtaag 70
||||| |||| || ||||||| |||||||| ||||||| |||||||||||| |||||
Sbjct: 67 ttttcctcttacgaatcaagtcgatccggaagtctcttccgaatcaacttgatctgtaag 8
Query: 71 a 71
|
Sbjct: 7 a 7
