miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32405_mmu-mir-1839:mirbase
Length = 73
Score = 141 bits (71), Expect = 8e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 9 gaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctacca 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctacca 60
Query: 69 acagccattgc 79
|||||||||||
Sbjct: 61 acagccattgc 71
>32406_mmu-mir-1839:mirbase
Length = 73
Score = 141 bits (71), Expect = 8e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 9 gaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctacca 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctacca 60
Query: 69 acagccattgc 79
|||||||||||
Sbjct: 61 acagccattgc 71
>27309_eca-mir-1839:mirbase
Length = 60
Score = 119 bits (60), Expect = 3e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 12 aaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctaccaaca 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctaccaaca 60
>33503_bta-mir-1839:mirbase
Length = 72
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 7 atgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctac 66
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 2 atgaaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatctac 61
Query: 67 caacagc 73
|||||||
Sbjct: 62 caacagc 68
>34149_ssc-mir-1839:mirbase
Length = 80
Score = 111 bits (56), Expect = 7e-26
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 2 cctacatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactta 61
|||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 1 cctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttt 60
Query: 62 tctaccaacagc 73
||||||||||||
Sbjct: 61 tctaccaacagc 72
>34150_ssc-mir-1839:mirbase
Length = 80
Score = 111 bits (56), Expect = 7e-26
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 2 cctacatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactta 61
|||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 1 cctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttt 60
Query: 62 tctaccaacagc 73
||||||||||||
Sbjct: 61 tctaccaacagc 72
>26923_cfa-mir-1839:mirbase
Length = 73
Score = 107 bits (54), Expect = 1e-24
Identities = 64/66 (96%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 9 gaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactt-atctacc 67
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 4 gaaaaggtagatagaacaggtcttgttagcaaaataaattcaagacctacttaatctacc 63
Query: 68 aacagc 73
||||||
Sbjct: 64 aacagc 69
