miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28108_mml-mir-671:mirbase
Length = 118
Score = 178 bits (90), Expect = 6e-46
Identities = 100/102 (98%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 19 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 75
Query: 79 tcaagggctccacctctttcgagccgtagagccagggctggt 120
|| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 76 tc-agggctccacctctttcgggccgtagagccagggctggt 116
>28109_mml-mir-671:mirbase
Length = 118
Score = 178 bits (90), Expect = 6e-46
Identities = 100/102 (98%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 19 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 75
Query: 79 tcaagggctccacctctttcgagccgtagagccagggctggt 120
|| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 76 tc-agggctccacctctttcgggccgtagagccagggctggt 116
>28988_hsa-mir-671:mirbase
Length = 118
Score = 178 bits (90), Expect = 6e-46
Identities = 100/102 (98%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 19 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 75
Query: 79 tcaagggctccacctctttcgagccgtagagccagggctggt 120
|| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 76 tc-agggctccacctctttcgggccgtagagccagggctggt 116
>28989_hsa-mir-671:mirbase
Length = 118
Score = 178 bits (90), Expect = 6e-46
Identities = 100/102 (98%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 19 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 75
Query: 79 tcaagggctccacctctttcgagccgtagagccagggctggt 120
|| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 76 tc-agggctccacctctttcgggccgtagagccagggctggt 116
>30588_ptr-mir-671:mirbase
Length = 117
Score = 178 bits (90), Expect = 6e-46
Identities = 100/102 (98%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 19 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 74
Query: 79 tcaagggctccacctctttcgagccgtagagccagggctggt 120
|| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 tc-agggctccacctctttcgggccgtagagccagggctggt 115
>31233_ppy-mir-671:mirbase
Length = 118
Score = 178 bits (90), Expect = 6e-46
Identities = 100/102 (98%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 19 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 75
Query: 79 tcaagggctccacctctttcgagccgtagagccagggctggt 120
|| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 76 tc-agggctccacctctttcgggccgtagagccagggctggt 116
>31234_ppy-mir-671:mirbase
Length = 118
Score = 178 bits (90), Expect = 6e-46
Identities = 100/102 (98%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 19 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 75
Query: 79 tcaagggctccacctctttcgagccgtagagccagggctggt 120
|| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 76 tc-agggctccacctctttcgggccgtagagccagggctggt 116
>32284_mmu-mir-671:mirbase
Length = 98
Score = 170 bits (86), Expect = 1e-43
Identities = 93/94 (98%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 19 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 65
Query: 79 tcaagggctccacctctttcgagccgtagagcca 112
|| |||||||||||||||||||||||||||||||
Sbjct: 66 tc-agggctccacctctttcgagccgtagagcca 98
>32285_mmu-mir-671:mirbase
Length = 98
Score = 170 bits (86), Expect = 1e-43
Identities = 93/94 (98%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 19 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 65
Query: 79 tcaagggctccacctctttcgagccgtagagcca 112
|| |||||||||||||||||||||||||||||||
Sbjct: 66 tc-agggctccacctctttcgagccgtagagcca 98
>33447_bta-mir-671:mirbase
Length = 118
Score = 155 bits (78), Expect = 9e-39
Identities = 97/102 (95%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 19 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 75
Query: 79 tcaagggctccacctctttcgagccgtagagccagggctggt 120
|| |||||||||||| || || ||||| ||||||||||||||
Sbjct: 76 tc-agggctccaccttttccgggccgtggagccagggctggt 116
>32974_rno-mir-671:mirbase
Length = 81
Score = 147 bits (74), Expect = 2e-36
Identities = 81/82 (98%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 22 caggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttctca 81
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttctc- 59
Query: 82 agggctccacctctttcgagcc 103
||||||||||||||||||||||
Sbjct: 60 agggctccacctctttcgagcc 81
>27253_eca-mir-671:mirbase
Length = 84
Score = 139 bits (70), Expect = 5e-34
Identities = 77/78 (98%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 19 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 60
Query: 79 tcaagggctccacctctt 96
|| |||||||||||||||
Sbjct: 61 tc-agggctccacctctt 77
>27254_eca-mir-671:mirbase
Length = 84
Score = 139 bits (70), Expect = 5e-34
Identities = 77/78 (98%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 19 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttc 60
Query: 79 tcaagggctccacctctt 96
|| |||||||||||||||
Sbjct: 61 tc-agggctccacctctt 77
>26899_cfa-mir-671:mirbase
Length = 74
Score = 133 bits (67), Expect = 3e-32
Identities = 74/75 (98%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 22 caggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttctca 81
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttctc- 59
Query: 82 agggctccacctctt 96
|||||||||||||||
Sbjct: 60 agggctccacctctt 74
