miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28108_mml-mir-671:mirbase
Length = 118
Score = 151 bits (76), Expect = 1e-37
Identities = 102/111 (91%)
Strand = Plus / Plus
Query: 10 gaactggcagggcaggaagagtatgaagccctggaggggctggaggtgatggatgtggtc 69
||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct: 7 gaactggcaggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttc 66
Query: 70 ctgcggttgtcagggctccacctctttcnagccgtagagccagggctggtg 120
|| ||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 67 ctccggttctcagggctccacctctttcgggccgtagagccagggctggtg 117
>28109_mml-mir-671:mirbase
Length = 118
Score = 151 bits (76), Expect = 1e-37
Identities = 102/111 (91%)
Strand = Plus / Plus
Query: 10 gaactggcagggcaggaagagtatgaagccctggaggggctggaggtgatggatgtggtc 69
||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct: 7 gaactggcaggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttc 66
Query: 70 ctgcggttgtcagggctccacctctttcnagccgtagagccagggctggtg 120
|| ||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 67 ctccggttctcagggctccacctctttcgggccgtagagccagggctggtg 117
>28988_hsa-mir-671:mirbase
Length = 118
Score = 151 bits (76), Expect = 1e-37
Identities = 102/111 (91%)
Strand = Plus / Plus
Query: 10 gaactggcagggcaggaagagtatgaagccctggaggggctggaggtgatggatgtggtc 69
||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct: 7 gaactggcaggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttc 66
Query: 70 ctgcggttgtcagggctccacctctttcnagccgtagagccagggctggtg 120
|| ||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 67 ctccggttctcagggctccacctctttcgggccgtagagccagggctggtg 117
>28989_hsa-mir-671:mirbase
Length = 118
Score = 151 bits (76), Expect = 1e-37
Identities = 102/111 (91%)
Strand = Plus / Plus
Query: 10 gaactggcagggcaggaagagtatgaagccctggaggggctggaggtgatggatgtggtc 69
||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct: 7 gaactggcaggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttc 66
Query: 70 ctgcggttgtcagggctccacctctttcnagccgtagagccagggctggtg 120
|| ||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 67 ctccggttctcagggctccacctctttcgggccgtagagccagggctggtg 117
>30588_ptr-mir-671:mirbase
Length = 117
Score = 151 bits (76), Expect = 1e-37
Identities = 102/111 (91%)
Strand = Plus / Plus
Query: 10 gaactggcagggcaggaagagtatgaagccctggaggggctggaggtgatggatgtggtc 69
||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct: 6 gaactggcaggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttc 65
Query: 70 ctgcggttgtcagggctccacctctttcnagccgtagagccagggctggtg 120
|| ||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 66 ctccggttctcagggctccacctctttcgggccgtagagccagggctggtg 116
>31233_ppy-mir-671:mirbase
Length = 118
Score = 151 bits (76), Expect = 1e-37
Identities = 102/111 (91%)
Strand = Plus / Plus
Query: 10 gaactggcagggcaggaagagtatgaagccctggaggggctggaggtgatggatgtggtc 69
||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct: 7 gaactggcaggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttc 66
Query: 70 ctgcggttgtcagggctccacctctttcnagccgtagagccagggctggtg 120
|| ||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 67 ctccggttctcagggctccacctctttcgggccgtagagccagggctggtg 117
>31234_ppy-mir-671:mirbase
Length = 118
Score = 151 bits (76), Expect = 1e-37
Identities = 102/111 (91%)
Strand = Plus / Plus
Query: 10 gaactggcagggcaggaagagtatgaagccctggaggggctggaggtgatggatgtggtc 69
||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct: 7 gaactggcaggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttc 66
Query: 70 ctgcggttgtcagggctccacctctttcnagccgtagagccagggctggtg 120
|| ||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 67 ctccggttctcagggctccacctctttcgggccgtagagccagggctggtg 117
>32284_mmu-mir-671:mirbase
Length = 98
Score = 133 bits (67), Expect = 3e-32
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 14 tggcagggcaggaagagtatgaagccctggaggggctggaggtgatggatgtggtcctgc 73
||||||| ||||||||| | |||||||||||||||||||||||||||||||| |||| |
Sbjct: 1 tggcaggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctcc 60
Query: 74 ggttgtcagggctccacctctttcnagccgtagagcca 111
|||| ||||||||||||||||||| |||||||||||||
Sbjct: 61 ggttctcagggctccacctctttcgagccgtagagcca 98
>32285_mmu-mir-671:mirbase
Length = 98
Score = 133 bits (67), Expect = 3e-32
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 14 tggcagggcaggaagagtatgaagccctggaggggctggaggtgatggatgtggtcctgc 73
||||||| ||||||||| | |||||||||||||||||||||||||||||||| |||| |
Sbjct: 1 tggcaggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctcc 60
Query: 74 ggttgtcagggctccacctctttcnagccgtagagcca 111
|||| ||||||||||||||||||| |||||||||||||
Sbjct: 61 ggttctcagggctccacctctttcgagccgtagagcca 98
>33447_bta-mir-671:mirbase
Length = 118
Score = 121 bits (61), Expect = 1e-28
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 13 ctggcagggcaggaagagtatgaagccctggaggggctggaggtgatggatgtggtcctg 72
|||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct: 10 ctggcaggccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctc 69
Query: 73 cggttgtcagggctccacctctttcnagccgtagagccagggctggtg 120
||||| |||||||||||||| || | ||||| |||||||||||||||
Sbjct: 70 cggttctcagggctccaccttttccgggccgtggagccagggctggtg 117
>32974_rno-mir-671:mirbase
Length = 81
Score = 107 bits (54), Expect = 2e-24
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 22 caggaagagtatgaagccctggaggggctggaggtgatggatgtggtcctgcggttgtca 81
||||||||| | |||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct: 1 caggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttctca 60
Query: 82 gggctccacctctttcnagcc 102
|||||||||||||||| ||||
Sbjct: 61 gggctccacctctttcgagcc 81
>26899_cfa-mir-671:mirbase
Length = 74
Score = 99.6 bits (50), Expect = 5e-22
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 22 caggaagagtatgaagccctggaggggctggaggtgatggatgtggtcctgcggttgtca 81
||||||||| | |||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct: 1 caggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttctca 60
Query: 82 gggctccacctctt 95
||||||||||||||
Sbjct: 61 gggctccacctctt 74
>27253_eca-mir-671:mirbase
Length = 84
Score = 99.6 bits (50), Expect = 5e-22
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 22 caggaagagtatgaagccctggaggggctggaggtgatggatgtggtcctgcggttgtca 81
||||||||| | |||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct: 4 caggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttctca 63
Query: 82 gggctccacctctt 95
||||||||||||||
Sbjct: 64 gggctccacctctt 77
>27254_eca-mir-671:mirbase
Length = 84
Score = 99.6 bits (50), Expect = 5e-22
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 22 caggaagagtatgaagccctggaggggctggaggtgatggatgtggtcctgcggttgtca 81
||||||||| | |||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct: 4 caggaagaggaggaagccctggaggggctggaggtgatggatgttttcctccggttctca 63
Query: 82 gggctccacctctt 95
||||||||||||||
Sbjct: 64 gggctccacctctt 77
