miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39486_ppt-MIR390b:mirbase
Length = 175
Score = 347 bits (175), Expect = 2e-96
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 1 atcaagctgctgggagatacaattacgaagctcaggagggatagcgcccagccctgcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcaagctgctgggagatacaattacgaagctcaggagggatagcgcccagccctgcttt 60
Query: 61 tactgttcaatcagttagagtgcttctgatagtaagatgcagatgcatgacgctatccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tactgttcaatcagttagagtgcttctgatagtaagatgcagatgcatgacgctatccat 120
Query: 121 tctgagctttgcaactgtgtccccctaatttgggcaaccggatcggttagctggt 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctgagctttgcaactgtgtccccctaatttgggcaaccggatcggttagctggt 175
>39485_ppt-MIR390a:mirbase
Length = 137
Score = 65.9 bits (33), Expect = 9e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 16 gatacaattacgaagctcaggagggatagcgcc 48
|||||||||||||||||||||||||||||||||
Sbjct: 4 gatacaattacgaagctcaggagggatagcgcc 36
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tatccattctgagctttgcaa 134
|||||||||||||||||||||
Sbjct: 105 tatccattctgagctttgcaa 125
>42785_zma-MIR390b:mirbase
Length = 192
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 gaagctcaggagggatagcgcc 48
||||||||||||||||||||||
Sbjct: 1 gaagctcaggagggatagcgcc 22
>42784_zma-MIR390a:mirbase
Length = 181
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 gaagctcaggagggatagcgcc 48
||||||||||||||||||||||
Sbjct: 1 gaagctcaggagggatagcgcc 22
>42565_sbi-MIR390:mirbase
Length = 179
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 gaagctcaggagggatagcgcc 48
||||||||||||||||||||||
Sbjct: 2 gaagctcaggagggatagcgcc 23
>41996_osa-MIR390:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 gaagctcaggagggatagcgcc 48
||||||||||||||||||||||
Sbjct: 18 gaagctcaggagggatagcgcc 39
>41773_bdi-MIR390b:mirbase
Length = 186
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 gaagctcaggagggatagcgcc 48
||||||||||||||||||||||
Sbjct: 18 gaagctcaggagggatagcgcc 39
>41772_bdi-MIR390:mirbase
Length = 209
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 gaagctcaggagggatagcgcc 48
||||||||||||||||||||||
Sbjct: 30 gaagctcaggagggatagcgcc 51
>41416_ptc-MIR390d:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgccc 49
||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccc 32
>41414_ptc-MIR390b:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgccc 49
||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccc 32
>39487_ppt-MIR390c:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 agctcaggagggatagcgccca 50
||||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgccca 35
>41640_vvi-MIR390:mirbase
Length = 140
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>41415_ptc-MIR390c:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>41413_ptc-MIR390a:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>41237_csi-MIR390:mirbase
Length = 154
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 21 aagctcaggagggatagcgcc 41
>41131_tcc-MIR390b:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 21 aagctcaggagggatagcgcc 41
>41130_tcc-MIR390a:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 21 aagctcaggagggatagcgcc 41
>41053_ghr-MIR390c:mirbase
Length = 114
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>41052_ghr-MIR390b:mirbase
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgcc 38
>41051_ghr-MIR390a:mirbase
Length = 124
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgcc 35
>40705_mtr-MIR390:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgcc 26
>40468_gma-MIR390a:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>40467_gma-MIR390a:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>40372_rco-MIR390b:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgcc 26
>40371_rco-MIR390a:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgcc 26
>40294_bna-MIR390c:mirbase
Length = 128
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 23 aagctcaggagggatagcgcc 43
>40293_bna-MIR390b:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgcc 38
>40292_bna-MIR390a:mirbase
Length = 144
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 33 aagctcaggagggatagcgcc 53
>40073_ath-MIR390b:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgcc 35
>40072_ath-MIR390a:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgcc 38
>39863_aly-MIR390b:mirbase
Length = 127
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>39862_aly-MIR390a:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 29 aagctcaggagggatagcgcc 49
