miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39509_ppt-MIR529g:mirbase
Length = 149
Score = 295 bits (149), Expect = 5e-81
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 1 tcacctttttctacattcaagctggggttcgaagagagagagcacagtcccagacttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcacctttttctacattcaagctggggttcgaagagagagagcacagtcccagacttttc 60
Query: 61 actcacgaccactttgagtgtcttatggtgaacagtagtcgggctgtactctctcttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actcacgaccactttgagtgtcttatggtgaacagtagtcgggctgtactctctcttttc 120
Query: 121 cagtccctactcgaatgtgtttctatcgc 149
|||||||||||||||||||||||||||||
Sbjct: 121 cagtccctactcgaatgtgtttctatcgc 149
>39504_ppt-MIR529b:mirbase
Length = 149
Score = 69.9 bits (35), Expect = 5e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 98 gtcgggctgtactctctcttttccagtccctactcgaatgtgt 140
|||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 98 gtcgggctgtgctctctcttttccagtccctactcggatgtgt 140
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 18 caagctggggttcgaagagagagagcacag 47
||||| ||| ||||||||||||||||||||
Sbjct: 18 caagccgggattcgaagagagagagcacag 47
>39503_ppt-MIR529a:mirbase
Length = 149
Score = 67.9 bits (34), Expect = 2e-12
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 7 ttttctacattcaagctggggttcgaagagagagagcacagtcccagacttttc 60
|||||||||||||||| ||| |||||||||||||||||||| || ||||||||
Sbjct: 7 ttttctacattcaagccgggtttcgaagagagagagcacagccctggacttttc 60
>39505_ppt-MIR529c:mirbase
Length = 151
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 101 gggctgtactctctcttttccagtccctac 130
||||||| ||||||||||||||||||||||
Sbjct: 103 gggctgtgctctctcttttccagtccctac 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 11 ctacattcaagctggggttcgaagagagagagcacag 47
|||||| ||||| || ||||||||||||||||||||
Sbjct: 11 ctacatccaagccaggattcgaagagagagagcacag 47
