miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39517_ppt-MIR534b:mirbase
Length = 279
Score = 553 bits (279), Expect = e-158
Identities = 279/279 (100%)
Strand = Plus / Plus
Query: 1 gcactcatgtatgcaacttgtatggacagagtgactagtctagtgttcacgagtgccaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcactcatgtatgcaacttgtatggacagagtgactagtctagtgttcacgagtgccaat 60
Query: 61 ttttggatgccttctattgctgtgctggtctgtgaggcggcgtaactccttgttttgcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttggatgccttctattgctgtgctggtctgtgaggcggcgtaactccttgttttgcaa 120
Query: 121 cagttgacagtgcacaaagtatatgtgtggctggtgacgtgcgacgcattgggtaagatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagttgacagtgcacaaagtatatgtgtggctggtgacgtgcgacgcattgggtaagatc 180
Query: 181 tatgtctcttcagtgcgcggggaagtttgtccgccgacggcattcagattgctaaactag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatgtctcttcagtgcgcggggaagtttgtccgccgacggcattcagattgctaaactag 240
Query: 241 actcgtcagtatgtccattacagttgcatacttgtgtgg 279
|||||||||||||||||||||||||||||||||||||||
Sbjct: 241 actcgtcagtatgtccattacagttgcatacttgtgtgg 279
>39516_ppt-MIR534a:mirbase
Length = 200
Score = 54.0 bits (27), Expect = 6e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 11 atgcaacttgtatggacagagtgactagtctagtg 45
||||||||||| |||||||| ||||||||||||||
Sbjct: 7 atgcaacttgtgtggacagactgactagtctagtg 41
Score = 44.1 bits (22), Expect = 6e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 246 tcagtatgtccattacagttgcatac 271
|||||||||||||| |||||||||||
Sbjct: 171 tcagtatgtccattgcagttgcatac 196
