miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39518_ppt-MIR535a:mirbase
Length = 135
Score = 268 bits (135), Expect = 1e-72
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 1 ggaggtgaaacggtggagaacctaggtgacaacgagagagagcacgctggaatgcttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaggtgaaacggtggagaacctaggtgacaacgagagagagcacgctggaatgcttttc 60
Query: 61 atgcaatacgcttggatgtgttctagcgtgccctctaccgttgtcgccaaacatcttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgcaatacgcttggatgtgttctagcgtgccctctaccgttgtcgccaaacatcttctc 120
Query: 121 catgacttctcctct 135
|||||||||||||||
Sbjct: 121 catgacttctcctct 135
>39520_ppt-MIR535c:mirbase
Length = 81
Score = 99.6 bits (50), Expect = 5e-22
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 26 gtgacaacgagagagagcacgctggaatgcttttcatgcaatacgcttggatgtgttcta 85
|||||||||||||||||||||||||||||| ||||| |||||| || ||||||||||||
Sbjct: 1 gtgacaacgagagagagcacgctggaatgc-tttcacgcaataagcctggatgtgttctt 59
Query: 86 gcgtgccctctaccgttgtcgc 107
||||||||| | ||||||||||
Sbjct: 60 gcgtgccctttcccgttgtcgc 81
>39519_ppt-MIR535b:mirbase
Length = 81
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 26 gtgacaacgagagagagcacgctggaatgc 55
||||||||||||||||||||||||||||||
Sbjct: 1 gtgacaacgagagagagcacgctggaatgc 30
>39521_ppt-MIR535d:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 25 ggtgacaacgagagagagcacgctggaatgc 55
||||||||||||||||||||||| |||||||
Sbjct: 1 ggtgacaacgagagagagcacgccggaatgc 31
>42109_osa-MIR535:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 ggtgacaacgagagagagcacgc 47
|||||||||||||||||||||||
Sbjct: 4 ggtgacaacgagagagagcacgc 26
>41690_vvi-MIR535c:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 tgacaacgagagagagcacgct 48
||||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgct 32
>41689_vvi-MIR535b:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 tgacaacgagagagagcacgct 48
||||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgct 32
>41688_vvi-MIR535a:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 tgacaacgagagagagcacgct 48
||||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgct 32
>41159_tcc-MIR535:mirbase
Length = 120
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 27 tgacaacgagagagagcacgct 48
||||||||||||||||||||||
Sbjct: 98 tgacaacgagagagagcacgct 77
>40392_rco-MIR535:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 tgacaacgagagagagcacgct 48
||||||||||||||||||||||
Sbjct: 6 tgacaacgagagagagcacgct 27
>41206_aqc-MIR535:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 tgacaacgagagagagcacgc 47
|||||||||||||||||||||
Sbjct: 1 tgacaacgagagagagcacgc 21
>39387_pab-MIR535:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 tgacaacgagagagagcacgc 47
|||||||||||||||||||||
Sbjct: 24 tgacaacgagagagagcacgc 44
