miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39520_ppt-MIR535c:mirbase
Length = 81
Score = 161 bits (81), Expect = 9e-41
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 gtgacaacgagagagagcacgctggaatgctttcacgcaataagcctggatgtgttcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgacaacgagagagagcacgctggaatgctttcacgcaataagcctggatgtgttcttg 60
Query: 61 cgtgccctttcccgttgtcgc 81
|||||||||||||||||||||
Sbjct: 61 cgtgccctttcccgttgtcgc 81
>39518_ppt-MIR535a:mirbase
Length = 135
Score = 99.6 bits (50), Expect = 3e-22
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1 gtgacaacgagagagagcacgctggaatgc-tttcacgcaataagcctggatgtgttctt 59
|||||||||||||||||||||||||||||| ||||| |||||| || ||||||||||||
Sbjct: 26 gtgacaacgagagagagcacgctggaatgcttttcatgcaatacgcttggatgtgttcta 85
Query: 60 gcgtgccctttcccgttgtcgc 81
||||||||| | ||||||||||
Sbjct: 86 gcgtgccctctaccgttgtcgc 107
>39519_ppt-MIR535b:mirbase
Length = 81
Score = 65.9 bits (33), Expect = 4e-12
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 1 gtgacaacgagagagagcacgctggaatgctttcacgcaataagcctggatgtgttcttg 60
|||||||||||||||||||||||||||||| || | || |||| ||| | ||||||||
Sbjct: 1 gtgacaacgagagagagcacgctggaatgcactcttgtaagaagcatgggtatgttcttg 60
Query: 61 cgtgccctttcccgttgtcgc 81
||||||| ||||| ||||||
Sbjct: 61 tgtgccctctcccgctgtcgc 81
>39521_ppt-MIR535d:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 gtgacaacgagagagagcacgctggaatgctttca 35
|||||||||||||||||||||| ||||||| ||||
Sbjct: 2 gtgacaacgagagagagcacgccggaatgcgttca 36
>42109_osa-MIR535:mirbase
Length = 94
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gtgacaacgagagagagcacgc 22
||||||||||||||||||||||
Sbjct: 5 gtgacaacgagagagagcacgc 26
>41690_vvi-MIR535c:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 tgacaacgagagagagcacgct 23
||||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgct 32
>41689_vvi-MIR535b:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 tgacaacgagagagagcacgct 23
||||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgct 32
>41688_vvi-MIR535a:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 tgacaacgagagagagcacgct 23
||||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgct 32
>41159_tcc-MIR535:mirbase
Length = 120
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 2 tgacaacgagagagagcacgct 23
||||||||||||||||||||||
Sbjct: 98 tgacaacgagagagagcacgct 77
>40392_rco-MIR535:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 tgacaacgagagagagcacgct 23
||||||||||||||||||||||
Sbjct: 6 tgacaacgagagagagcacgct 27
>41206_aqc-MIR535:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 tgacaacgagagagagcacgc 22
|||||||||||||||||||||
Sbjct: 1 tgacaacgagagagagcacgc 21
>39387_pab-MIR535:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 tgacaacgagagagagcacgc 22
|||||||||||||||||||||
Sbjct: 24 tgacaacgagagagagcacgc 44
