miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39521_ppt-MIR535d:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 ggtgacaacgagagagagcacgccggaatgcgttcatgcagcgagtgcctggaggtgttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgacaacgagagagagcacgccggaatgcgttcatgcagcgagtgcctggaggtgttc 60
Query: 61 gagcgtgccctctcccgtcgtcacc 85
|||||||||||||||||||||||||
Sbjct: 61 gagcgtgccctctcccgtcgtcacc 85
>39520_ppt-MIR535c:mirbase
Length = 81
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2 gtgacaacgagagagagcacgccggaatgcgttca 36
|||||||||||||||||||||| ||||||| ||||
Sbjct: 1 gtgacaacgagagagagcacgctggaatgctttca 35
>39518_ppt-MIR535a:mirbase
Length = 135
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ggtgacaacgagagagagcacgccggaatgc 31
||||||||||||||||||||||| |||||||
Sbjct: 25 ggtgacaacgagagagagcacgctggaatgc 55
>42109_osa-MIR535:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ggtgacaacgagagagagcacgccgg 26
||||||||||||||||||||||||||
Sbjct: 4 ggtgacaacgagagagagcacgccgg 29
>39519_ppt-MIR535b:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 gtgacaacgagagagagcacgccggaatgc 31
|||||||||||||||||||||| |||||||
Sbjct: 1 gtgacaacgagagagagcacgctggaatgc 30
>39387_pab-MIR535:mirbase
Length = 129
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacaacgagagagagcacgcc 24
||||||||||||||||||||||
Sbjct: 24 tgacaacgagagagagcacgcc 45
>41690_vvi-MIR535c:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tgacaacgagagagagcacgc 23
|||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgc 31
>41689_vvi-MIR535b:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tgacaacgagagagagcacgc 23
|||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgc 31
>41688_vvi-MIR535a:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tgacaacgagagagagcacgc 23
|||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgc 31
>41206_aqc-MIR535:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tgacaacgagagagagcacgc 23
|||||||||||||||||||||
Sbjct: 1 tgacaacgagagagagcacgc 21
>41159_tcc-MIR535:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 3 tgacaacgagagagagcacgc 23
|||||||||||||||||||||
Sbjct: 98 tgacaacgagagagagcacgc 78
>40392_rco-MIR535:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tgacaacgagagagagcacgc 23
|||||||||||||||||||||
Sbjct: 6 tgacaacgagagagagcacgc 26
