miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39419_pta-MIR159c:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 gatgtgtgaatgatgcgggagctgattttgtccaggaaatgtcttttccttggattgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgtgtgaatgatgcgggagctgattttgtccaggaaatgtcttttccttggattgaag 60
Query: 61 ggagctcccttatgtagcatacatt 85
|||||||||||||||||||||||||
Sbjct: 61 ggagctcccttatgtagcatacatt 85
>39730_smo-MIR159:mirbase
Length = 279
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 ccttggattgaagggagctccctt 71
||||||||||||||||||||||||
Sbjct: 248 ccttggattgaagggagctccctt 271
>42693_zma-MIR159d:mirbase
Length = 217
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctcc 68
||||||||||||||||||||
Sbjct: 178 cttggattgaagggagctcc 197
>42692_zma-MIR159c:mirbase
Length = 217
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctcc 68
||||||||||||||||||||
Sbjct: 178 cttggattgaagggagctcc 197
>42495_sbi-MIR159b:mirbase
Length = 253
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctcc 68
||||||||||||||||||||
Sbjct: 214 cttggattgaagggagctcc 233
>42454_sof-MIR159c:mirbase
Length = 238
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctcc 68
||||||||||||||||||||
Sbjct: 199 cttggattgaagggagctcc 218
>41638_vvi-MIR319f:mirbase
Length = 193
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 atgtgtgaatgatgcgggag 21
||||||||||||||||||||
Sbjct: 114 atgtgtgaatgatgcgggag 133
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 161 cttggactgaagggagctccctt 183
>41406_ptc-MIR319c:mirbase
Length = 196
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 atgtgtgaatgatgcgggag 21
||||||||||||||||||||
Sbjct: 120 atgtgtgaatgatgcgggag 139
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 167 cttggactgaagggagctccctt 189
>41302_ptc-MIR159d:mirbase
Length = 194
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctcc 68
||||||||||||||||||||
Sbjct: 165 cttggattgaagggagctcc 184
>40369_rco-MIR319c:mirbase
Length = 188
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 atgtgtgaatgatgcgggag 21
||||||||||||||||||||
Sbjct: 115 atgtgtgaatgatgcgggag 134
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 162 cttggactgaagggagctccctt 184
>39740_smo-MIR319:mirbase
Length = 215
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 48 ccttggattgaagggagctccctt 71
||||||| ||||||||||||||||
Sbjct: 184 ccttggactgaagggagctccctt 207
>39424_pta-MIR319:mirbase
Length = 206
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 49 cttggattgaagggagctcc 68
||||||||||||||||||||
Sbjct: 27 cttggattgaagggagctcc 8
>39417_pta-MIR159a:mirbase
Length = 210
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctcc 68
||||||||||||||||||||
Sbjct: 184 cttggattgaagggagctcc 203
>41922_osa-MIR159f:mirbase
Length = 188
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctc 67
|||||||||||||||||||
Sbjct: 158 cttggattgaagggagctc 176
>41921_osa-MIR159e:mirbase
Length = 191
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 ttggattgaagggagctcc 68
|||||||||||||||||||
Sbjct: 162 ttggattgaagggagctcc 180
>41920_osa-MIR159d:mirbase
Length = 189
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 ttggattgaagggagctcc 68
|||||||||||||||||||
Sbjct: 160 ttggattgaagggagctcc 178
>41919_osa-MIR159c:mirbase
Length = 197
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 ttggattgaagggagctcc 68
|||||||||||||||||||
Sbjct: 168 ttggattgaagggagctcc 186
>41730_bdi-MIR159:mirbase
Length = 234
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctc 67
|||||||||||||||||||
Sbjct: 184 cttggattgaagggagctc 202
>41636_vvi-MIR319c:mirbase
Length = 182
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 150 cttggactgaagggagctccctt 172
>41635_vvi-MIR319b:mirbase
Length = 194
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 162 cttggactgaagggagctccctt 184
>41410_ptc-MIR319g:mirbase
Length = 204
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 tgtgtgaatgatgcgggag 21
|||||||||||||||||||
Sbjct: 128 tgtgtgaatgatgcgggag 146
>41409_ptc-MIR319f:mirbase
Length = 202
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 tgtgtgaatgatgcgggag 21
|||||||||||||||||||
Sbjct: 126 tgtgtgaatgatgcgggag 144
>41407_ptc-MIR319d:mirbase
Length = 193
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 164 cttggactgaagggagctccctt 186
>41404_ptc-MIR319a:mirbase
Length = 188
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 159 cttggactgaagggagctccctt 181
>40704_mtr-MIR319b:mirbase
Length = 180
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 155 cttggactgaagggagctccctt 177
>40703_mtr-MIR319:mirbase
Length = 207
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 168 cttggactgaagggagctccctt 190
>40657_mtr-MIR159a:mirbase
Length = 183
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 45 tttccttggattgaagggagctc 67
|||| ||||||||||||||||||
Sbjct: 148 tttctttggattgaagggagctc 170
>40465_gma-MIR319b:mirbase
Length = 208
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 169 cttggactgaagggagctccctt 191
>40464_gma-MIR319a:mirbase
Length = 207
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 168 cttggactgaagggagctccctt 190
>40367_rco-MIR319a:mirbase
Length = 211
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 185 cttggactgaagggagctccctt 207
>40071_ath-MIR319c:mirbase
Length = 199
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 tgtgtgaatgatgcgggag 21
|||||||||||||||||||
Sbjct: 124 tgtgtgaatgatgcgggag 142
>40018_ath-MIR159c:mirbase
Length = 225
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 ttggattgaagggagctcc 68
|||||||||||||||||||
Sbjct: 196 ttggattgaagggagctcc 214
>39806_aly-MIR159c:mirbase
Length = 220
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 ttggattgaagggagctcc 68
|||||||||||||||||||
Sbjct: 198 ttggattgaagggagctcc 216
