miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39450_pta-MIR1315:mirbase
Length = 192
Score = 381 bits (192), Expect = e-106
Identities = 192/192 (100%)
Strand = Plus / Plus
Query: 1 gtcaaggatttggaggcccgtcaggttcccaaccgagtccgggaccatctgcagactgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtcaaggatttggaggcccgtcaggttcccaaccgagtccgggaccatctgcagactgga 60
Query: 61 gcaccagcccaggacaaggctttggaggccggtcaggttcccaaccgagtccgggaccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcaccagcccaggacaaggctttggaggccggtcaggttcccaaccgagtccgggaccat 120
Query: 121 ctgcagactggagcactcttccaggtcaaggatttggaggcctgtcaggttcccaaccga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctgcagactggagcactcttccaggtcaaggatttggaggcctgtcaggttcccaaccga 180
Query: 181 gtccgggactat 192
||||||||||||
Sbjct: 181 gtccgggactat 192
>39412_pab-MIR3710:mirbase
Length = 135
Score = 77.8 bits (39), Expect = 3e-15
Identities = 87/103 (84%)
Strand = Plus / Minus
Query: 9 tttggaggcccgtcaggttcccaaccgagtccgggaccatctgcagactggagcaccagc 68
||||||||||||||||||||||||||||||| || | | ||||||| |||||| ||
Sbjct: 114 tttggaggcccgtcaggttcccaaccgagtctggaagcgtctgcagggcggagcaataga 55
Query: 69 ccaggacaaggctttggaggccggtcaggttcccaaccgagtc 111
||| ||| ||||||||||| ||||||||||||||||||||
Sbjct: 54 taaggttaagactttggaggcccgtcaggttcccaaccgagtc 12
Score = 65.9 bits (33), Expect = 1e-11
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 75 caaggctttggaggccggtcaggttcccaaccgagtccgggaccatctgcagactggagc 134
|||| ||||||||||| |||||||||||||||||||| || | | ||||||| |||||
Sbjct: 120 caagactttggaggcccgtcaggttcccaaccgagtctggaagcgtctgcagggcggagc 61
Query: 135 actcttccaggtcaaggatttggaggcctgtcaggttcccaaccgagtc 183
| | |||| ||| |||||||||| ||||||||||||||||||||
Sbjct: 60 aatagataaggttaagactttggaggcccgtcaggttcccaaccgagtc 12
Score = 58.0 bits (29), Expect = 3e-09
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 143 aggtcaaggatttggaggcctgtcaggttcccaaccgagtc 183
|||||||| |||||||||| ||||||||||||||||||||
Sbjct: 124 aggtcaagactttggaggcccgtcaggttcccaaccgagtc 84
