miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41348_ptc-MIR168b:mirbase
Length = 136
Score = 270 bits (136), Expect = 2e-73
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 1 ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
Query: 61 taaacacgattggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taaacacgattggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgca 120
Query: 121 tcaactgaatcggaga 136
||||||||||||||||
Sbjct: 121 tcaactgaatcggaga 136
>41347_ptc-MIR168a:mirbase
Length = 160
Score = 113 bits (57), Expect = 3e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 1 ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
Query: 61 t 61
|
Sbjct: 61 t 61
Score = 69.9 bits (35), Expect = 5e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 101 gaattggatcccgccttgcatcaactgaatcggag 135
|||||||||||||||||||||||||||||||||||
Sbjct: 125 gaattggatcccgccttgcatcaactgaatcggag 159
>41215_crt-MIR168:mirbase
Length = 201
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 ggtctctaattcgcttggtgcaggtcgggaactgatt 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 11 ggtctctaattcgcttggtgcaggtcgggaactgatt 47
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 101 gaattggatcccgccttgcatcaactgaatcggaga 136
||||||||||||||||||||||||||||||||||||
Sbjct: 134 gaattggatcccgccttgcatcaactgaatcggaga 169
>41210_ccl-MIR168:mirbase
Length = 176
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 ggtctctaattcgcttggtgcaggtcgggaactgatt 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 10 ggtctctaattcgcttggtgcaggtcgggaactgatt 46
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 101 gaattggatcccgccttgcatcaactgaatcggaga 136
||||||||||||||||||||||||||||||||||||
Sbjct: 133 gaattggatcccgccttgcatcaactgaatcggaga 168
>41101_tcc-MIR168:mirbase
Length = 167
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 ggtctctaattcgcttggtgcaggtcgggaactgatt 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 11 ggtctctaattcgcttggtgcaggtcgggaactgatt 47
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 101 gaattggatcccgccttgcatcaactgaatcggaga 136
||||||||||||||||||||||||||||||||||||
Sbjct: 118 gaattggatcccgccttgcatcaactgaatcggaga 153
>40448_gma-MIR168:mirbase
Length = 125
Score = 69.9 bits (35), Expect = 5e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 101 gaattggatcccgccttgcatcaactgaatcggag 135
|||||||||||||||||||||||||||||||||||
Sbjct: 79 gaattggatcccgccttgcatcaactgaatcggag 113
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 ggtctctaattcgcttggtgcaggtcgggaac 32
||||||||||||||||||||||||||||||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaac 40
>40355_rco-MIR168:mirbase
Length = 131
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 95 gaaagagaattggatcccgccttgcatcaactgaatcg 132
||||| ||||||||||||||||||||||||||||||||
Sbjct: 91 gaaagtgaattggatcccgccttgcatcaactgaatcg 128
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 6 ctaattcgcttggtgcaggtcgggaactgatt 37
||||||||||||||||||||||||||||||||
Sbjct: 1 ctaattcgcttggtgcaggtcgggaactgatt 32
>41596_vvi-MIR168:mirbase
Length = 132
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 ggtctctaattcgcttggtgcaggtcgggaac 32
||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaac 32
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 107 gatcccgccttgcatcaactgaatcggaga 136
||||||||||||||||||||||||||||||
Sbjct: 99 gatcccgccttgcatcaactgaatcggaga 128
>40043_ath-MIR168a:mirbase
Length = 138
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 103 attggatcccgccttgcatcaactgaatcgga 134
||||||||||||||||||||||||||||||||
Sbjct: 96 attggatcccgccttgcatcaactgaatcgga 127
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 attcgcttggtgcaggtcgggaactgattcggc 41
|||||||||||||||||||||||| |||||||
Sbjct: 16 attcgcttggtgcaggtcgggaaccaattcggc 48
>39832_aly-MIR168a:mirbase
Length = 155
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 103 attggatcccgccttgcatcaactgaatcgga 134
||||||||||||||||||||||||||||||||
Sbjct: 102 attggatcccgccttgcatcaactgaatcgga 133
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 attcgcttggtgcaggtcgggaactgattcggc 41
|||||||||||||||||||||||| |||||||
Sbjct: 22 attcgcttggtgcaggtcgggaaccaattcggc 54
>40044_ath-MIR168b:mirbase
Length = 124
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 9 attcgcttggtgcaggtcgggaactgatt 37
|||||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactgatt 45
>39833_aly-MIR168b:mirbase
Length = 176
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 9 attcgcttggtgcaggtcgggaactgatt 37
|||||||||||||||||||||||||||||
Sbjct: 41 attcgcttggtgcaggtcgggaactgatt 69
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 107 gatcccgccttgcatcaactgaatcggag 135
||||||| |||| ||||||||||||||||
Sbjct: 110 gatcccgtcttgtatcaactgaatcggag 138
>40271_bna-MIR168:mirbase
Length = 133
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcaggtcgggaactgatt 37
|||||||||||||||||||||||||||
Sbjct: 18 tcgcttggtgcaggtcgggaactgatt 44
>42742_zma-MIR168b:mirbase
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
||||||||||||||||||| ||||||||||
Sbjct: 63 ggatcccgccttgcatcaagtgaatcggag 92
>42741_zma-MIR168a:mirbase
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>42470_ssp-MIR168a:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
||||||||||||||| ||| ||||||||||
Sbjct: 60 ggatcccgccttgcaccaagtgaatcggag 89
>42460_sof-MIR168b:mirbase
Length = 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
||||||||||||||| ||| ||||||||||
Sbjct: 62 ggatcccgccttgcaccaagtgaatcggag 91
>42459_sof-MIR168a:mirbase
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>41962_osa-MIR168a:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>41961_osa-MIR168a:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>41888_hvu-MIR168:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
||||||||||||||| ||| ||||||||||
Sbjct: 66 ggatcccgccttgcaccaagtgaatcggag 95
>41887_hvu-MIR168:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
||||||||||||||| ||| ||||||||||
Sbjct: 66 ggatcccgccttgcaccaagtgaatcggag 95
>41753_bdi-MIR168:mirbase
Length = 136
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
||||||||||||||| ||| ||||||||||
Sbjct: 75 ggatcccgccttgcaccaagtgaatcggag 104
