miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>41371_ptc-MIR169q:mirbase
          Length = 115

 Score =  228 bits (115), Expect = 7e-61
 Identities = 115/115 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttgttagttagccaaggacgacttgcctgttcctagcaatttgggatttgccctggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcttgttagttagccaaggacgacttgcctgttcctagcaatttgggatttgccctggac 60

                                                                  
Query: 61  taagaggcaggaccctcattccgggtttcaggcagtctccttggctaggttgaca 115
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taagaggcaggaccctcattccgggtttcaggcagtctccttggctaggttgaca 115




>41535_sly-MIR169b:mirbase
          Length = 205

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 84  ggtttcaggcagtctccttggcta 107
           ||||||||||||||||||||||||
Sbjct: 10  ggtttcaggcagtctccttggcta 33




>40283_bna-MIR169l:mirbase
          Length = 199

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 84  ggtttcaggcagtctccttggcta 107
           ||||||||||||||||||||||||
Sbjct: 151 ggtttcaggcagtctccttggcta 174




>40281_bna-MIR169j:mirbase
          Length = 167

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 84  ggtttcaggcagtctccttggcta 107
           ||||||||||||||||||||||||
Sbjct: 135 ggtttcaggcagtctccttggcta 158




>40054_ath-MIR169j:mirbase
          Length = 221

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 84  ggtttcaggcagtctccttggcta 107
           ||||||||||||||||||||||||
Sbjct: 173 ggtttcaggcagtctccttggcta 196




>39845_aly-MIR169l:mirbase
          Length = 272

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 84  ggtttcaggcagtctccttggcta 107
           ||||||||||||||||||||||||
Sbjct: 183 ggtttcaggcagtctccttggcta 206




>39843_aly-MIR169j:mirbase
          Length = 300

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 84  ggtttcaggcagtctccttggcta 107
           ||||||||||||||||||||||||
Sbjct: 204 ggtttcaggcagtctccttggcta 227




>41363_ptc-MIR169i:mirbase
          Length = 123

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 85  gtttcaggcagtctccttggcta 107
           |||||||||||||||||||||||
Sbjct: 92  gtttcaggcagtctccttggcta 114




>40280_bna-MIR169i:mirbase
          Length = 174

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 85  gtttcaggcagtctccttggcta 107
           |||||||||||||||||||||||
Sbjct: 138 gtttcaggcagtctccttggcta 160




>40276_bna-MIR169e:mirbase
          Length = 277

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 85  gtttcaggcagtctccttggcta 107
           |||||||||||||||||||||||
Sbjct: 1   gtttcaggcagtctccttggcta 23




>41367_ptc-MIR169m:mirbase
          Length = 119

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 83  gggtttcaggcagtctccttggcta 107
           ||||||||||| |||||||||||||
Sbjct: 86  gggtttcaggcggtctccttggcta 110




>42753_zma-MIR169k:mirbase
          Length = 133

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 89  caggcagtctccttggctag 108
           ||||||||||||||||||||
Sbjct: 95  caggcagtctccttggctag 114




>42752_zma-MIR169j:mirbase
          Length = 151

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 89  caggcagtctccttggctag 108
           ||||||||||||||||||||
Sbjct: 114 caggcagtctccttggctag 133




>42535_sbi-MIR169g:mirbase
          Length = 152

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 89  caggcagtctccttggctag 108
           ||||||||||||||||||||
Sbjct: 115 caggcagtctccttggctag 134




>42534_sbi-MIR169f:mirbase
          Length = 148

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 89  caggcagtctccttggctag 108
           ||||||||||||||||||||
Sbjct: 110 caggcagtctccttggctag 129




>41976_osa-MIR169m:mirbase
          Length = 138

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 89  caggcagtctccttggctag 108
           ||||||||||||||||||||
Sbjct: 109 caggcagtctccttggctag 128




>41974_osa-MIR169k:mirbase
          Length = 156

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 89  caggcagtctccttggctag 108
           ||||||||||||||||||||
Sbjct: 127 caggcagtctccttggctag 146




>41973_osa-MIR169j:mirbase
          Length = 125

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 89  caggcagtctccttggctag 108
           ||||||||||||||||||||
Sbjct: 96  caggcagtctccttggctag 115




>41757_bdi-MIR169e:mirbase
          Length = 164

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 89  caggcagtctccttggctag 108
           ||||||||||||||||||||
Sbjct: 113 caggcagtctccttggctag 132




>41375_ptc-MIR169u:mirbase
          Length = 122

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 tagccaaggacgacttgcct 30
          ||||||||||||||||||||
Sbjct: 11 tagccaaggacgacttgcct 30




>41365_ptc-MIR169k:mirbase
          Length = 203

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                          
Query: 1  tcttgttagttagccaaggacgacttgcctgt 32
          ||||||| | |||||||||| |||||||||||
Sbjct: 1  tcttgtttggtagccaaggatgacttgcctgt 32




>41364_ptc-MIR169j:mirbase
          Length = 137

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 89  caggcagtctccttggctag 108
           ||||||||||||||||||||
Sbjct: 111 caggcagtctccttggctag 130




>41354_ptc-MIR169ae:mirbase
          Length = 107

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 2  cttgttagttagccaaggacgacttgcc 29
          |||||| | |||||||||||||||||||
Sbjct: 1  cttgtttggtagccaaggacgacttgcc 28




>41351_ptc-MIR169ab:mirbase
          Length = 107

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 2  cttgttagttagccaaggacgacttgcc 29
          |||||| | |||||||||||||||||||
Sbjct: 1  cttgtttggtagccaaggacgacttgcc 28




>41111_tcc-MIR169j:mirbase
          Length = 141

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                          
Query: 1  tcttgttagttagccaaggacgacttgcctgt 32
          ||||||| | |||||||||| |||||||||||
Sbjct: 11 tcttgtttgatagccaaggatgacttgcctgt 42




>40058_ath-MIR169n:mirbase
          Length = 215

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 84  ggtttcaggcagtctccttggcta 107
           |||||||||||||||| |||||||
Sbjct: 168 ggtttcaggcagtctctttggcta 191




>40057_ath-MIR169m:mirbase
          Length = 212

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 88  tcaggcagtctccttggcta 107
           ||||||||||||||||||||
Sbjct: 150 tcaggcagtctccttggcta 169




>40056_ath-MIR169l:mirbase
          Length = 211

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 84  ggtttcaggcagtctccttggcta 107
           |||||||||||||||| |||||||
Sbjct: 167 ggtttcaggcagtctctttggcta 190




>40055_ath-MIR169k:mirbase
          Length = 213

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 88  tcaggcagtctccttggcta 107
           ||||||||||||||||||||
Sbjct: 149 tcaggcagtctccttggcta 168




>40053_ath-MIR169i:mirbase
          Length = 206

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 88  tcaggcagtctccttggcta 107
           ||||||||||||||||||||
Sbjct: 146 tcaggcagtctccttggcta 165




>40052_ath-MIR169h:mirbase
          Length = 190

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 88  tcaggcagtctccttggcta 107
           ||||||||||||||||||||
Sbjct: 127 tcaggcagtctccttggcta 146




>39847_aly-MIR169n:mirbase
          Length = 252

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 84  ggtttcaggcagtctccttggcta 107
           |||||||||||||||| |||||||
Sbjct: 178 ggtttcaggcagtctctttggcta 201




>39844_aly-MIR169k:mirbase
          Length = 203

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 88  tcaggcagtctccttggcta 107
           ||||||||||||||||||||
Sbjct: 143 tcaggcagtctccttggcta 162




>39841_aly-MIR169h:mirbase
          Length = 205

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 88  tcaggcagtctccttggcta 107
           ||||||||||||||||||||
Sbjct: 137 tcaggcagtctccttggcta 156