miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41493_ptc-MIR478o:mirbase
Length = 95
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 tctcctttttaggaataaacgttaatattttagacgagtctcctaaattttagggactga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctcctttttaggaataaacgttaatattttagacgagtctcctaaattttagggactga 60
Query: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
>41498_ptc-MIR478u:mirbase
Length = 95
Score = 172 bits (87), Expect = 3e-44
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 1 tctcctttttaggaataaacgttaatattttagacgagtctcctaaattttagggactga 60
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 tctcctttttagggataaacgttaatattttagacgagtctcctaatttttagggactga 60
Query: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
>41495_ptc-MIR478q:mirbase
Length = 95
Score = 165 bits (83), Expect = 7e-42
Identities = 92/95 (96%)
Strand = Plus / Plus
Query: 1 tctcctttttaggaataaacgttaatattttagacgagtctcctaaattttagggactga 60
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 1 tctcctttttagggataaacgttaatgttttagacgagtctcctaaattttagggactaa 60
Query: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
>41497_ptc-MIR478s:mirbase
Length = 95
Score = 157 bits (79), Expect = 2e-39
Identities = 91/95 (95%)
Strand = Plus / Plus
Query: 1 tctcctttttaggaataaacgttaatattttagacgagtctcctaaattttagggactga 60
|||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 1 tctcatttttagggataaacgttaatgttttagacgagtctcctaaattttagggactaa 60
Query: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
>41494_ptc-MIR478p:mirbase
Length = 95
Score = 149 bits (75), Expect = 4e-37
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 1 tctcctttttaggaataaacgttaatattttagacgagtctcctaaattttagggactga 60
|||||||||| || | |||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 1 tctccttttttgggacaaacgttaatattttagacgagtctcctaatttttagggactaa 60
Query: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
>41486_ptc-MIR478h:mirbase
Length = 95
Score = 149 bits (75), Expect = 4e-37
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 1 tctcctttttaggaataaacgttaatattttagacgagtctcctaaattttagggactga 60
||||||||||||| | |||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 1 tctcctttttagggacaaacgtcaatattttagacgagtctcctaatttttagggactgg 60
Query: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
>41492_ptc-MIR478n:mirbase
Length = 59
Score = 101 bits (51), Expect = 9e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 37 agtctcctaaattttagggactgatgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 agtctcctaatttttagggactgatgttatttttaacgtgtctcctatttttagggacc 59
>41491_ptc-MIR478m:mirbase
Length = 59
Score = 101 bits (51), Expect = 9e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 37 agtctcctaaattttagggactgatgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 agtctcctaatttttagggactgatgttatttttaacgtgtctcctatttttagggacc 59
>41490_ptc-MIR478l:mirbase
Length = 59
Score = 101 bits (51), Expect = 9e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 37 agtctcctaaattttagggactgatgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 agtctcctaatttttagggactgatgttatttttaacgtgtctcctatttttagggacc 59
>41489_ptc-MIR478k:mirbase
Length = 59
Score = 101 bits (51), Expect = 9e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 37 agtctcctaaattttagggactgatgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 agtctcctaatttttagggactgatgttatttttaacgtgtctcctatttttagggacc 59
>41488_ptc-MIR478j:mirbase
Length = 59
Score = 101 bits (51), Expect = 9e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 37 agtctcctaaattttagggactgatgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 agtctcctaatttttagggactgatgttatttttaacgtgtctcctatttttagggacc 59
>41487_ptc-MIR478i:mirbase
Length = 59
Score = 101 bits (51), Expect = 9e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 37 agtctcctaaattttagggactgatgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 agtctcctaatttttagggactgatgttatttttaacgtgtctcctatttttagggacc 59
>41496_ptc-MIR478r:mirbase
Length = 58
Score = 79.8 bits (40), Expect = 3e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 52 agggactgatgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 15 agggactgatatcatttttaacgtgtctcctatttttagggacc 58
>41481_ptc-MIR478b:mirbase
Length = 96
Score = 71.9 bits (36), Expect = 8e-14
Identities = 71/80 (88%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 17 aaacgttaatattttagacgagtctcctaaattttagggactgatgtcattttta-acgt 75
|||||| || ||||||||||||||||||| |||||||||||| ||| |||||| ||||
Sbjct: 18 aaacgtcaacattttagacgagtctcctat-ttttagggactggtgttattttttgacgt 76
Query: 76 gtctcctatttttagggacc 95
|||| |||||||||||||||
Sbjct: 77 gtcttctatttttagggacc 96
>41482_ptc-MIR478c:mirbase
Length = 95
Score = 63.9 bits (32), Expect = 2e-11
Identities = 82/96 (85%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 1 tctcctttttaggaataaacgttaatattttagacgagtctcctaaattttagggactga 60
||||||||||||| |||| || |||||||||||||||| | || | |||||||| |||
Sbjct: 1 tctcctttttagggttaaatgtcaatattttagacgagttttct-atttttagggtctgg 59
Query: 61 tgtca-tttttaacgtgtctcctatttttagggacc 95
||| | ||||| |||||||| |||||||||||||||
Sbjct: 60 tgttattttttgacgtgtcttctatttttagggacc 95
>41480_ptc-MIR478a:mirbase
Length = 96
Score = 61.9 bits (31), Expect = 8e-11
Identities = 69/79 (87%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 17 aaacgttaatattttagacgagtctcctaaattttagggactgatgtcattttta-acgt 75
|||||| || |||||||||||||||| || |||||||||||| ||| |||||| ||||
Sbjct: 17 aaacgtcaacattttagacgagtctcttat-ttttagggactggtgttattttttgacgt 75
Query: 76 gtctcctatttttagggac 94
|||| ||||||||||||||
Sbjct: 76 gtcttctatttttagggac 94
