miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41496_ptc-MIR478r:mirbase
Length = 58
Score = 115 bits (58), Expect = 3e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 1 agtctcctagtttgagggactgatatcatttttaacgtgtctcctatttttagggacc 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtctcctagtttgagggactgatatcatttttaacgtgtctcctatttttagggacc 58
>41498_ptc-MIR478u:mirbase
Length = 95
Score = 79.8 bits (40), Expect = 2e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 15 agggactgatatcatttttaacgtgtctcctatttttagggacc 58
|||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 52 agggactgatgtcatttttaacgtgtctcctatttttagggacc 95
>41493_ptc-MIR478o:mirbase
Length = 95
Score = 79.8 bits (40), Expect = 2e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 15 agggactgatatcatttttaacgtgtctcctatttttagggacc 58
|||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 52 agggactgatgtcatttttaacgtgtctcctatttttagggacc 95
>41497_ptc-MIR478s:mirbase
Length = 95
Score = 71.9 bits (36), Expect = 4e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 15 agggactgatatcatttttaacgtgtctcctatttttagggacc 58
||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 52 agggactaatgtcatttttaacgtgtctcctatttttagggacc 95
>41495_ptc-MIR478q:mirbase
Length = 95
Score = 71.9 bits (36), Expect = 4e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 15 agggactgatatcatttttaacgtgtctcctatttttagggacc 58
||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 52 agggactaatgtcatttttaacgtgtctcctatttttagggacc 95
>41494_ptc-MIR478p:mirbase
Length = 95
Score = 71.9 bits (36), Expect = 4e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 15 agggactgatatcatttttaacgtgtctcctatttttagggacc 58
||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 52 agggactaatgtcatttttaacgtgtctcctatttttagggacc 95
>41492_ptc-MIR478n:mirbase
Length = 59
Score = 71.9 bits (36), Expect = 4e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 15 agggactgatatcatttttaacgtgtctcctatttttagggacc 58
|||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 16 agggactgatgttatttttaacgtgtctcctatttttagggacc 59
>41491_ptc-MIR478m:mirbase
Length = 59
Score = 71.9 bits (36), Expect = 4e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 15 agggactgatatcatttttaacgtgtctcctatttttagggacc 58
|||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 16 agggactgatgttatttttaacgtgtctcctatttttagggacc 59
>41490_ptc-MIR478l:mirbase
Length = 59
Score = 71.9 bits (36), Expect = 4e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 15 agggactgatatcatttttaacgtgtctcctatttttagggacc 58
|||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 16 agggactgatgttatttttaacgtgtctcctatttttagggacc 59
>41489_ptc-MIR478k:mirbase
Length = 59
Score = 71.9 bits (36), Expect = 4e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 15 agggactgatatcatttttaacgtgtctcctatttttagggacc 58
|||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 16 agggactgatgttatttttaacgtgtctcctatttttagggacc 59
>41488_ptc-MIR478j:mirbase
Length = 59
Score = 71.9 bits (36), Expect = 4e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 15 agggactgatatcatttttaacgtgtctcctatttttagggacc 58
|||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 16 agggactgatgttatttttaacgtgtctcctatttttagggacc 59
>41487_ptc-MIR478i:mirbase
Length = 59
Score = 71.9 bits (36), Expect = 4e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 15 agggactgatatcatttttaacgtgtctcctatttttagggacc 58
|||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 16 agggactgatgttatttttaacgtgtctcctatttttagggacc 59
>41486_ptc-MIR478h:mirbase
Length = 95
Score = 71.9 bits (36), Expect = 4e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 15 agggactgatatcatttttaacgtgtctcctatttttagggacc 58
|||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 52 agggactggtgtcatttttaacgtgtctcctatttttagggacc 95
>41481_ptc-MIR478b:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 2e-06
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 1 agtctcctagtttgagggactgatatcattttta-acgtgtctcctatttttagggacc 58
||||||||| ||| |||||||| | | |||||| |||||||| |||||||||||||||
Sbjct: 38 agtctcctatttttagggactggtgttattttttgacgtgtcttctatttttagggacc 96
>41482_ptc-MIR478c:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 29 tttttaacgtgtctcctatttttagggacc 58
||||| |||||||| |||||||||||||||
Sbjct: 66 tttttgacgtgtcttctatttttagggacc 95
>41480_ptc-MIR478a:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 4e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 29 tttttaacgtgtctcctatttttagggac 57
||||| |||||||| ||||||||||||||
Sbjct: 66 tttttgacgtgtcttctatttttagggac 94
