miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41497_ptc-MIR478s:mirbase
Length = 95
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 tctcatttttagggataaacgttaatgttttagacgagtctcctaaattttagggactaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctcatttttagggataaacgttaatgttttagacgagtctcctaaattttagggactaa 60
Query: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
>41495_ptc-MIR478q:mirbase
Length = 95
Score = 180 bits (91), Expect = 1e-46
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 1 tctcatttttagggataaacgttaatgttttagacgagtctcctaaattttagggactaa 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctcctttttagggataaacgttaatgttttagacgagtctcctaaattttagggactaa 60
Query: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
>41498_ptc-MIR478u:mirbase
Length = 95
Score = 157 bits (79), Expect = 2e-39
Identities = 91/95 (95%)
Strand = Plus / Plus
Query: 1 tctcatttttagggataaacgttaatgttttagacgagtctcctaaattttagggactaa 60
|||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
Sbjct: 1 tctcctttttagggataaacgttaatattttagacgagtctcctaatttttagggactga 60
Query: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
>41493_ptc-MIR478o:mirbase
Length = 95
Score = 157 bits (79), Expect = 2e-39
Identities = 91/95 (95%)
Strand = Plus / Plus
Query: 1 tctcatttttagggataaacgttaatgttttagacgagtctcctaaattttagggactaa 60
|||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 1 tctcctttttaggaataaacgttaatattttagacgagtctcctaaattttagggactga 60
Query: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
>41494_ptc-MIR478p:mirbase
Length = 95
Score = 149 bits (75), Expect = 4e-37
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 1 tctcatttttagggataaacgttaatgttttagacgagtctcctaaattttagggactaa 60
|||| ||||| |||| |||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 1 tctccttttttgggacaaacgttaatattttagacgagtctcctaatttttagggactaa 60
Query: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
>41486_ptc-MIR478h:mirbase
Length = 95
Score = 133 bits (67), Expect = 2e-32
Identities = 88/95 (92%)
Strand = Plus / Plus
Query: 1 tctcatttttagggataaacgttaatgttttagacgagtctcctaaattttagggactaa 60
|||| |||||||||| |||||| ||| ||||||||||||||||||| |||||||||||
Sbjct: 1 tctcctttttagggacaaacgtcaatattttagacgagtctcctaatttttagggactgg 60
Query: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtcatttttaacgtgtctcctatttttagggacc 95
>41492_ptc-MIR478n:mirbase
Length = 59
Score = 93.7 bits (47), Expect = 2e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 37 agtctcctaaattttagggactaatgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 1 agtctcctaatttttagggactgatgttatttttaacgtgtctcctatttttagggacc 59
>41491_ptc-MIR478m:mirbase
Length = 59
Score = 93.7 bits (47), Expect = 2e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 37 agtctcctaaattttagggactaatgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 1 agtctcctaatttttagggactgatgttatttttaacgtgtctcctatttttagggacc 59
>41490_ptc-MIR478l:mirbase
Length = 59
Score = 93.7 bits (47), Expect = 2e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 37 agtctcctaaattttagggactaatgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 1 agtctcctaatttttagggactgatgttatttttaacgtgtctcctatttttagggacc 59
>41489_ptc-MIR478k:mirbase
Length = 59
Score = 93.7 bits (47), Expect = 2e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 37 agtctcctaaattttagggactaatgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 1 agtctcctaatttttagggactgatgttatttttaacgtgtctcctatttttagggacc 59
>41488_ptc-MIR478j:mirbase
Length = 59
Score = 93.7 bits (47), Expect = 2e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 37 agtctcctaaattttagggactaatgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 1 agtctcctaatttttagggactgatgttatttttaacgtgtctcctatttttagggacc 59
>41487_ptc-MIR478i:mirbase
Length = 59
Score = 93.7 bits (47), Expect = 2e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 37 agtctcctaaattttagggactaatgtcatttttaacgtgtctcctatttttagggacc 95
|||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 1 agtctcctaatttttagggactgatgttatttttaacgtgtctcctatttttagggacc 59
>41496_ptc-MIR478r:mirbase
Length = 58
Score = 71.9 bits (36), Expect = 8e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 52 agggactaatgtcatttttaacgtgtctcctatttttagggacc 95
||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 15 agggactgatatcatttttaacgtgtctcctatttttagggacc 58
>41481_ptc-MIR478b:mirbase
Length = 96
Score = 58.0 bits (29), Expect = 1e-09
Identities = 61/69 (88%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 28 ttttagacgagtctcctaaattttagggactaatgtcattttta-acgtgtctcctattt 86
|||||||||||||||||| ||||||||||| ||| |||||| |||||||| ||||||
Sbjct: 29 ttttagacgagtctcctat-ttttagggactggtgttattttttgacgtgtcttctattt 87
Query: 87 ttagggacc 95
|||||||||
Sbjct: 88 ttagggacc 96
>41482_ptc-MIR478c:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 80/96 (83%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 1 tctcatttttagggataaacgttaatgttttagacgagtctcctaaattttagggactaa 60
|||| ||||||||| |||| || ||| |||||||||||| | || | |||||||| ||
Sbjct: 1 tctcctttttagggttaaatgtcaatattttagacgagttttct-atttttagggtctgg 59
Query: 61 tgtca-tttttaacgtgtctcctatttttagggacc 95
||| | ||||| |||||||| |||||||||||||||
Sbjct: 60 tgttattttttgacgtgtcttctatttttagggacc 95
>41480_ptc-MIR478a:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 28 ttttagacgagtctcctaaattttagggactaatgtcattttta-acgtgtctcctattt 86
||||||||||||||| || ||||||||||| ||| |||||| |||||||| ||||||
Sbjct: 28 ttttagacgagtctcttat-ttttagggactggtgttattttttgacgtgtcttctattt 86
Query: 87 ttagggac 94
||||||||
Sbjct: 87 ttagggac 94
