miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41503_ptc-MIR481b:mirbase
Length = 220
Score = 436 bits (220), Expect = e-123
Identities = 220/220 (100%)
Strand = Plus / Plus
Query: 1 atcctaggacctcacttaacagcttaagctattgggttgagatggttctttgacatgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcctaggacctcacttaacagcttaagctattgggttgagatggttctttgacatgata 60
Query: 61 tcagagccttgataaccaagtggtctcgagtttgaatctcatcatcctcatttatttgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcagagccttgataaccaagtggtctcgagtttgaatctcatcatcctcatttatttgat 120
Query: 121 aaaaaatacttaaaggggtgtgttagagaataatataaatcatattctggaacctcacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaaaatacttaaaggggtgtgttagagaataatataaatcatattctggaacctcacct 180
Query: 181 aacagcttaagctattgggttgaaatgattctttgacatt 220
||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aacagcttaagctattgggttgaaatgattctttgacatt 220
>41504_ptc-MIR481c:mirbase
Length = 195
Score = 174 bits (88), Expect = 2e-44
Identities = 115/124 (92%)
Strand = Plus / Plus
Query: 1 atcctaggacctcacttaacagcttaagctattgggttgagatggttctttgacatgata 60
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 1 atcctaggacctcacttaacagcttaagcttttgggttgagatgattctttgacatgata 60
Query: 61 tcagagccttgataaccaagtggtctcgagtttgaatctcatcatcctcatttatttgat 120
||||||| ||||| |||||| |||| |||||| |||||||| ||||| ||||||||||||
Sbjct: 61 tcagagctttgatgaccaagcggtcacgagttcgaatctcaccatccccatttatttgat 120
Query: 121 aaaa 124
||||
Sbjct: 121 aaaa 124
Score = 71.9 bits (36), Expect = 2e-13
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 172 acctcacctaacagcttaagctattgggttgaaatgattctttgacat 219
||||||| |||||||||||||| ||||||||| |||||||||||||||
Sbjct: 9 acctcacttaacagcttaagcttttgggttgagatgattctttgacat 56
>41506_ptc-MIR481e:mirbase
Length = 196
Score = 163 bits (82), Expect = 7e-41
Identities = 117/126 (92%), Gaps = 2/126 (1%)
Strand = Plus / Plus
Query: 1 atcctaggacctcacttaacagcttaagctattgggttgagatggttctttgacatgata 60
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 1 atcctaggacctcacctaacagcttaagctattgggttgagatgattctttgacatggta 60
Query: 61 tcagagccttgataaccaagtggtctcgagtttgaatctcatca-tcctcatttatttga 119
||||||||||||| ||||||||||| |||||| |||||||| || |||| ||||||||||
Sbjct: 61 tcagagccttgatgaccaagtggtcacgagttcgaatctcaccactcct-atttatttga 119
Query: 120 taaaaa 125
||||||
Sbjct: 120 taaaaa 125
Score = 87.7 bits (44), Expect = 3e-18
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 172 acctcacctaacagcttaagctattgggttgaaatgattctttgacat 219
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 9 acctcacctaacagcttaagctattgggttgagatgattctttgacat 56
>41505_ptc-MIR481d:mirbase
Length = 141
Score = 89.7 bits (45), Expect = 8e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 140 gtgttagagaataatataaatcatattctggaacctcacctaacagcttaagctatt 196
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 85 gtgttagagaataatataaatcatattctaagacctcacctaacagcttaagctatt 141
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 gacctcacttaacagcttaagctatt 33
|||||||| |||||||||||||||||
Sbjct: 116 gacctcacctaacagcttaagctatt 141
>41502_ptc-MIR481a:mirbase
Length = 93
Score = 75.8 bits (38), Expect = 1e-14
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 141 tgttagagaataatataaatcatattctggaacctcacctaacagcttaagcta 194
||||||||||||||||||||||||| || | ||||||| |||||||||||||||
Sbjct: 40 tgttagagaataatataaatcatatcctaggacctcacttaacagcttaagcta 93
Score = 61.9 bits (31), Expect = 2e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 atcctaggacctcacttaacagcttaagcta 31
|||||||||||||||||||||||||||||||
Sbjct: 63 atcctaggacctcacttaacagcttaagcta 93
