miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41504_ptc-MIR481c:mirbase
Length = 195
Score = 387 bits (195), Expect = e-108
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 1 atcctaggacctcacttaacagcttaagcttttgggttgagatgattctttgacatgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcctaggacctcacttaacagcttaagcttttgggttgagatgattctttgacatgata 60
Query: 61 tcagagctttgatgaccaagcggtcacgagttcgaatctcaccatccccatttatttgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcagagctttgatgaccaagcggtcacgagttcgaatctcaccatccccatttatttgat 120
Query: 121 aaaattaagcacaaggtaatgtgagtctgtgcaagtttcaagcccaaagagctttcactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaattaagcacaaggtaatgtgagtctgtgcaagtttcaagcccaaagagctttcactt 180
Query: 181 gagggggtgtgttag 195
|||||||||||||||
Sbjct: 181 gagggggtgtgttag 195
>41506_ptc-MIR481e:mirbase
Length = 196
Score = 270 bits (136), Expect = 4e-73
Identities = 182/196 (92%), Gaps = 1/196 (0%)
Strand = Plus / Plus
Query: 1 atcctaggacctcacttaacagcttaagcttttgggttgagatgattctttgacatgata 60
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 1 atcctaggacctcacctaacagcttaagctattgggttgagatgattctttgacatggta 60
Query: 61 tcagagctttgatgaccaagcggtcacgagttcgaatctcaccatccccatttatttgat 120
||||||| |||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 61 tcagagccttgatgaccaagtggtcacgagttcgaatctcaccactcctatttatttgat 120
Query: 121 -aaaattaagcacaaggtaatgtgagtctgtgcaagtttcaagcccaaagagctttcact 179
||||| ||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 121 aaaaatcaagcacaaggtaatgtgggcctatgcaagtttcaagcccaaagagctttcact 180
Query: 180 tgagggggtgtgttag 195
||||||||||| ||||
Sbjct: 181 tgagggggtgtattag 196
>41503_ptc-MIR481b:mirbase
Length = 220
Score = 174 bits (88), Expect = 2e-44
Identities = 115/124 (92%)
Strand = Plus / Plus
Query: 1 atcctaggacctcacttaacagcttaagcttttgggttgagatgattctttgacatgata 60
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 1 atcctaggacctcacttaacagcttaagctattgggttgagatggttctttgacatgata 60
Query: 61 tcagagctttgatgaccaagcggtcacgagttcgaatctcaccatccccatttatttgat 120
||||||| ||||| |||||| |||| |||||| |||||||| ||||| ||||||||||||
Sbjct: 61 tcagagccttgataaccaagtggtctcgagtttgaatctcatcatcctcatttatttgat 120
Query: 121 aaaa 124
||||
Sbjct: 121 aaaa 124
Score = 71.9 bits (36), Expect = 2e-13
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 9 acctcacttaacagcttaagcttttgggttgagatgattctttgacat 56
||||||| |||||||||||||| ||||||||| |||||||||||||||
Sbjct: 172 acctcacctaacagcttaagctattgggttgaaatgattctttgacat 219
>41502_ptc-MIR481a:mirbase
Length = 93
Score = 60.0 bits (30), Expect = 7e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 atcctaggacctcacttaacagcttaagct 30
||||||||||||||||||||||||||||||
Sbjct: 63 atcctaggacctcacttaacagcttaagct 92
