miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41505_ptc-MIR481d:mirbase
Length = 141
Score = 280 bits (141), Expect = 3e-76
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 1 ggcagtcaaagagggggcaaggaaaggggagaattatgttactgtcacttggctgttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcagtcaaagagggggcaaggaaaggggagaattatgttactgtcacttggctgttatt 60
Query: 61 cgtagaactagaatgacattgagggtgttagagaataatataaatcatattctaagacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgtagaactagaatgacattgagggtgttagagaataatataaatcatattctaagacct 120
Query: 121 cacctaacagcttaagctatt 141
|||||||||||||||||||||
Sbjct: 121 cacctaacagcttaagctatt 141
>41503_ptc-MIR481b:mirbase
Length = 220
Score = 89.7 bits (45), Expect = 5e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 85 gtgttagagaataatataaatcatattctaagacctcacctaacagcttaagctatt 141
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 140 gtgttagagaataatataaatcatattctggaacctcacctaacagcttaagctatt 196
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 116 gacctcacctaacagcttaagctatt 141
|||||||| |||||||||||||||||
Sbjct: 8 gacctcacttaacagcttaagctatt 33
>41502_ptc-MIR481a:mirbase
Length = 93
Score = 83.8 bits (42), Expect = 3e-17
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 86 tgttagagaataatataaatcatattctaagacctcacctaacagcttaagcta 139
||||||||||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct: 40 tgttagagaataatataaatcatatcctaggacctcacttaacagcttaagcta 93
>41506_ptc-MIR481e:mirbase
Length = 196
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 116 gacctcacctaacagcttaagctatt 141
||||||||||||||||||||||||||
Sbjct: 8 gacctcacctaacagcttaagctatt 33
