miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41506_ptc-MIR481e:mirbase
Length = 196
Score = 389 bits (196), Expect = e-109
Identities = 196/196 (100%)
Strand = Plus / Plus
Query: 1 atcctaggacctcacctaacagcttaagctattgggttgagatgattctttgacatggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcctaggacctcacctaacagcttaagctattgggttgagatgattctttgacatggta 60
Query: 61 tcagagccttgatgaccaagtggtcacgagttcgaatctcaccactcctatttatttgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcagagccttgatgaccaagtggtcacgagttcgaatctcaccactcctatttatttgat 120
Query: 121 aaaaatcaagcacaaggtaatgtgggcctatgcaagtttcaagcccaaagagctttcact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaaatcaagcacaaggtaatgtgggcctatgcaagtttcaagcccaaagagctttcact 180
Query: 181 tgagggggtgtattag 196
||||||||||||||||
Sbjct: 181 tgagggggtgtattag 196
>41504_ptc-MIR481c:mirbase
Length = 195
Score = 270 bits (136), Expect = 4e-73
Identities = 182/196 (92%), Gaps = 1/196 (0%)
Strand = Plus / Plus
Query: 1 atcctaggacctcacctaacagcttaagctattgggttgagatgattctttgacatggta 60
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 1 atcctaggacctcacttaacagcttaagcttttgggttgagatgattctttgacatgata 60
Query: 61 tcagagccttgatgaccaagtggtcacgagttcgaatctcaccactcctatttatttgat 120
||||||| |||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 61 tcagagctttgatgaccaagcggtcacgagttcgaatctcaccatccccatttatttgat 120
Query: 121 aaaaatcaagcacaaggtaatgtgggcctatgcaagtttcaagcccaaagagctttcact 180
||||| ||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 121 -aaaattaagcacaaggtaatgtgagtctgtgcaagtttcaagcccaaagagctttcact 179
Query: 181 tgagggggtgtattag 196
||||||||||| ||||
Sbjct: 180 tgagggggtgtgttag 195
>41503_ptc-MIR481b:mirbase
Length = 220
Score = 163 bits (82), Expect = 6e-41
Identities = 117/126 (92%), Gaps = 2/126 (1%)
Strand = Plus / Plus
Query: 1 atcctaggacctcacctaacagcttaagctattgggttgagatgattctttgacatggta 60
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 1 atcctaggacctcacttaacagcttaagctattgggttgagatggttctttgacatgata 60
Query: 61 tcagagccttgatgaccaagtggtcacgagttcgaatctcaccactcct-atttatttga 119
||||||||||||| ||||||||||| |||||| |||||||| || |||| ||||||||||
Sbjct: 61 tcagagccttgataaccaagtggtctcgagtttgaatctcatca-tcctcatttatttga 119
Query: 120 taaaaa 125
||||||
Sbjct: 120 taaaaa 125
Score = 87.7 bits (44), Expect = 3e-18
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 9 acctcacctaacagcttaagctattgggttgagatgattctttgacat 56
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 172 acctcacctaacagcttaagctattgggttgaaatgattctttgacat 219
>41502_ptc-MIR481a:mirbase
Length = 93
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 atcctaggacctcacctaacagcttaagcta 31
||||||||||||||| |||||||||||||||
Sbjct: 63 atcctaggacctcacttaacagcttaagcta 93
>41505_ptc-MIR481d:mirbase
Length = 141
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 gacctcacctaacagcttaagctatt 33
||||||||||||||||||||||||||
Sbjct: 116 gacctcacctaacagcttaagctatt 141
