miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41509_ptc-MIR530a:mirbase
Length = 144
Score = 285 bits (144), Expect = 4e-78
Identities = 144/144 (100%)
Strand = Plus / Plus
Query: 1 gccaacatgttgcctttatctgcatttgcacctgcaccttacttgtttctttcttttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccaacatgttgcctttatctgcatttgcacctgcaccttacttgtttctttcttttgtt 60
Query: 61 tttgactccaaaaccaaaagtaagtttgaaacattaaaacaagcttgaggtgcaggtgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttgactccaaaaccaaaagtaagtttgaaacattaaaacaagcttgaggtgcaggtgca 120
Query: 121 ggtgcaggtgaatgccatgttggt 144
||||||||||||||||||||||||
Sbjct: 121 ggtgcaggtgaatgccatgttggt 144
>41510_ptc-MIR530b:mirbase
Length = 172
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 gccaacatgttgcctttatctgcatttgcacctgca 36
||||| ||||||||||||||||||||||||||||||
Sbjct: 1 gccaatatgttgcctttatctgcatttgcacctgca 36
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 105 ttgaggtgcaggtgcaggtgcaggtgaatgccatgttggt 144
|||||||||||||||| ||||||||||||||||| |||||
Sbjct: 133 ttgaggtgcaggtgcaagtgcaggtgaatgccattttggt 172
>41158_tcc-MIR530b:mirbase
Length = 178
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 7 atgttgcctttatctgcatttgcacctgcacctt 40
|||| |||||||||||||||||||||||||||||
Sbjct: 7 atgtagcctttatctgcatttgcacctgcacctt 40
Score = 50.1 bits (25), Expect = 5e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 107 gaggtgcaggtgcaggtgcaggtgaatgccatgttgg 143
|||||||||| |||| |||||||||||||||| ||||
Sbjct: 137 gaggtgcaggggcagctgcaggtgaatgccattttgg 173
>41157_tcc-MIR530a:mirbase
Length = 163
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tttatctgcatttgcacctgcacct 39
|||||||||||||||||||||||||
Sbjct: 15 tttatctgcatttgcacctgcacct 39
>41263_csi-MIR530b:mirbase
Length = 154
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 cctttatctgcatttgcacctgca 36
||||||||||||||||||||||||
Sbjct: 3 cctttatctgcatttgcacctgca 26
>41262_csi-MIR530a:mirbase
Length = 129
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 tctgcatttgcacctgcacctt 40
||||||||||||||||||||||
Sbjct: 14 tctgcatttgcacctgcacctt 35
>42106_osa-MIR530:mirbase
Length = 157
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 ctgcatttgcacctgcacct 39
||||||||||||||||||||
Sbjct: 10 ctgcatttgcacctgcacct 29
>42105_osa-MIR530:mirbase
Length = 157
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 ctgcatttgcacctgcacct 39
||||||||||||||||||||
Sbjct: 10 ctgcatttgcacctgcacct 29
