miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41510_ptc-MIR530b:mirbase
Length = 172
Score = 341 bits (172), Expect = 1e-94
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 1 gccaatatgttgcctttatctgcatttgcacctgcatcttttgcgtttgttttgtttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccaatatgttgcctttatctgcatttgcacctgcatcttttgcgtttgttttgtttttg 60
Query: 61 actccacaaacaaaatcaagttctgtcgatacagtatgtgggacaattagatatggaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actccacaaacaaaatcaagttctgtcgatacagtatgtgggacaattagatatggaaac 120
Query: 121 taataagcttagttgaggtgcaggtgcaagtgcaggtgaatgccattttggt 172
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taataagcttagttgaggtgcaggtgcaagtgcaggtgaatgccattttggt 172
>41509_ptc-MIR530a:mirbase
Length = 144
Score = 63.9 bits (32), Expect = 4e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 gccaatatgttgcctttatctgcatttgcacctgca 36
||||| ||||||||||||||||||||||||||||||
Sbjct: 1 gccaacatgttgcctttatctgcatttgcacctgca 36
Score = 63.9 bits (32), Expect = 4e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 133 ttgaggtgcaggtgcaagtgcaggtgaatgccattttggt 172
|||||||||||||||| ||||||||||||||||| |||||
Sbjct: 105 ttgaggtgcaggtgcaggtgcaggtgaatgccatgttggt 144
>41263_csi-MIR530b:mirbase
Length = 154
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 cctttatctgcatttgcacctgcatctt 40
||||||||||||||||||||||||||||
Sbjct: 3 cctttatctgcatttgcacctgcatctt 30
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 136 aggtgcaggtgcaagtgcaggtgaatgcc 164
|||||||| ||||||||||| ||||||||
Sbjct: 126 aggtgcagttgcaagtgcagatgaatgcc 154
>41158_tcc-MIR530b:mirbase
Length = 178
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 atgttgcctttatctgcatttgcacctgca 36
|||| |||||||||||||||||||||||||
Sbjct: 7 atgtagcctttatctgcatttgcacctgca 36
Score = 50.1 bits (25), Expect = 6e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 135 gaggtgcaggtgcaagtgcaggtgaatgccattttgg 171
|||||||||| ||| |||||||||||||||||||||
Sbjct: 137 gaggtgcaggggcagctgcaggtgaatgccattttgg 173
>41157_tcc-MIR530a:mirbase
Length = 163
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tttatctgcatttgcacctgca 36
||||||||||||||||||||||
Sbjct: 15 tttatctgcatttgcacctgca 36
>41205_aqc-MIR530:mirbase
Length = 142
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 tctgcatttgcacctgcatct 39
|||||||||||||||||||||
Sbjct: 10 tctgcatttgcacctgcatct 30
