miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32761_rno-mir-154:mirbase
Length = 84
Score = 149 bits (75), Expect = 3e-37
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1 tgcttgaagataggttatccgtgttgccttcgctttattcgtgacgaatcatacacggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tgcttgaagataggttatccgtgttgccttcgctttattcgtgacgaatcatacacggtt 64
Query: 61 gacctatttttcagt 75
|||||||||||||||
Sbjct: 65 gacctatttttcagt 79
>27765_mml-mir-154:mirbase
Length = 84
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 3 cttgaagataggttatccgtgttgccttcgctttattcgtgacgaatcatacacggttga 62
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 cttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttga 66
Query: 63 cctatttttcagt 75
|||||||||||||
Sbjct: 67 cctatttttcagt 79
>28220_mne-mir-154:mirbase
Length = 84
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 3 cttgaagataggttatccgtgttgccttcgctttattcgtgacgaatcatacacggttga 62
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 cttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttga 66
Query: 63 cctatttttcagt 75
|||||||||||||
Sbjct: 67 cctatttttcagt 79
>28312_ggo-mir-154:mirbase
Length = 84
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 3 cttgaagataggttatccgtgttgccttcgctttattcgtgacgaatcatacacggttga 62
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 cttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttga 66
Query: 63 cctatttttcagt 75
|||||||||||||
Sbjct: 67 cctatttttcagt 79
>28481_hsa-mir-154:mirbase
Length = 84
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 3 cttgaagataggttatccgtgttgccttcgctttattcgtgacgaatcatacacggttga 62
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 cttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttga 66
Query: 63 cctatttttcagt 75
|||||||||||||
Sbjct: 67 cctatttttcagt 79
>30101_ppa-mir-154:mirbase
Length = 84
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 3 cttgaagataggttatccgtgttgccttcgctttattcgtgacgaatcatacacggttga 62
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 cttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttga 66
Query: 63 cctatttttcagt 75
|||||||||||||
Sbjct: 67 cctatttttcagt 79
>30249_ptr-mir-154:mirbase
Length = 84
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 3 cttgaagataggttatccgtgttgccttcgctttattcgtgacgaatcatacacggttga 62
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 cttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttga 66
Query: 63 cctatttttcagt 75
|||||||||||||
Sbjct: 67 cctatttttcagt 79
>30863_ppy-mir-154:mirbase
Length = 84
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 3 cttgaagataggttatccgtgttgccttcgctttattcgtgacgaatcatacacggttga 62
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 cttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttga 66
Query: 63 cctatttttcagt 75
|||||||||||||
Sbjct: 67 cctatttttcagt 79
>31890_mmu-mir-154:mirbase
Length = 66
Score = 131 bits (66), Expect = 7e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 6 gaagataggttatccgtgttgccttcgctttattcgtgacgaatcatacacggttgacct 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagataggttatccgtgttgccttcgctttattcgtgacgaatcatacacggttgacct 60
Query: 66 attttt 71
||||||
Sbjct: 61 attttt 66
>33242_bta-mir-154:mirbase
Length = 84
Score = 105 bits (53), Expect = 4e-24
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 3 cttgaagataggttatccgtgttgccttcgctttattcgtgacgaatcatacacggttga 62
|||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |
Sbjct: 7 cttgaagataggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttca 66
Query: 63 cctattttt 71
|||||||||
Sbjct: 67 cctattttt 75
>33799_oar-mir-154a:mirbase
Length = 105
Score = 105 bits (53), Expect = 4e-24
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 3 cttgaagataggttatccgtgttgccttcgctttattcgtgacgaatcatacacggttga 62
|||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |
Sbjct: 16 cttgaagataggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttca 75
Query: 63 cctattttt 71
|||||||||
Sbjct: 76 cctattttt 84
>33800_oar-mir-154a:mirbase
Length = 105
Score = 105 bits (53), Expect = 4e-24
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 3 cttgaagataggttatccgtgttgccttcgctttattcgtgacgaatcatacacggttga 62
|||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |
Sbjct: 16 cttgaagataggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttca 75
Query: 63 cctattttt 71
|||||||||
Sbjct: 76 cctattttt 84
>27058_eca-mir-154:mirbase
Length = 64
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 8 agataggttatccgtgttgccttcgctttattcgtgacgaatcatacacggttgacctat 67
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 1 agataggttatccgtgttgccttcgctttatctgtgacgaatcatacacggttcacctat 60
Query: 68 tttt 71
||||
Sbjct: 61 tttt 64
>33801_oar-mir-154b:mirbase
Length = 109
Score = 52.0 bits (26), Expect = 5e-08
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 cttgaagataggttatccgtgttgccttcgctttattcgt-gacgaatcatacacggttg 61
|||||||| |||| ||| || ||| |||||||||||| | ||||||||||||| |||||
Sbjct: 18 cttgaagagaggtcttccatggtgcattcgctttattctttgacgaatcatacatggttg 77
Query: 62 acctattttt 71
|||| |||||
Sbjct: 78 accttttttt 87
>33802_oar-mir-154b:mirbase
Length = 109
Score = 52.0 bits (26), Expect = 5e-08
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 cttgaagataggttatccgtgttgccttcgctttattcgt-gacgaatcatacacggttg 61
|||||||| |||| ||| || ||| |||||||||||| | ||||||||||||| |||||
Sbjct: 18 cttgaagagaggtcttccatggtgcattcgctttattctttgacgaatcatacatggttg 77
Query: 62 acctattttt 71
|||| |||||
Sbjct: 78 accttttttt 87
>33399_bta-mir-494:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 12 aggttatccgtgttgccttcgctttattcgtgacgaatcatacacgg 58
||||||||||||||| |||| ||||||| ||| ||| |||||||||
Sbjct: 17 aggttatccgtgttgtcttctctttatttatgatgaaacatacacgg 63
>27225_eca-mir-539:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 29 ttcgctttattcgtgacgaatcataca 55
||||||||||| |||| ||||||||||
Sbjct: 30 ttcgctttatttgtgatgaatcataca 56
>33858_oar-mir-494:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 8e-04
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 12 aggttatccgtgttgccttcgctttattcgtgacgaatcatacacgg 58
||||||||||||||| ||| ||||||| ||| ||| |||||||||
Sbjct: 22 aggttatccgtgttgtattctctttatttatgatgaaacatacacgg 68
>33859_oar-mir-494:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 8e-04
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 12 aggttatccgtgttgccttcgctttattcgtgacgaatcatacacgg 58
||||||||||||||| ||| ||||||| ||| ||| |||||||||
Sbjct: 22 aggttatccgtgttgtattctctttatttatgatgaaacatacacgg 68
